Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48280 362 / 6e-120 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G25140 352 / 3e-116 CYP71B13 "cytochrome P450, family 71, subfamily B, polypeptide 13", cytochrome P450, family 71, subfamily B, polypeptide 13 (.1) AT5G25120 348 / 2e-114 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26310 348 / 2e-114 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT4G13310 348 / 2e-114 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT3G26300 347 / 4e-114 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT5G24950 346 / 9e-114 CYP71A15 "cytochrome P450, family 71, subfamily A, polypeptide 15", cytochrome P450, family 71, subfamily A, polypeptide 15 (.1) AT3G26330 346 / 9e-114 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT3G26230 345 / 2e-113 CYP71B24 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) AT2G30770 340 / 2e-111 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030924 [exp] 717 / 0 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10016601 [exp] 498 / 1e-172 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10009903 [exp] 480 / 6e-166 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10019157 [exp] 452 / 6e-155 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10030708 [exp] 451 / 2e-154 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10029035 [exp] 443 / 3e-151 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10019159 [exp] 440 / 3e-150 AT3G26330 365 / 1e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10013194 [exp] 440 / 5e-150 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10012767 [exp] 432 / 4e-147 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G074300 [exp] 484 / 2e-167 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 476 / 3e-164 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 469 / 1e-161 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 466 / 2e-160 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 457 / 7e-157 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 453 / 2e-155 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130800 [exp] 452 / 4e-155 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 434 / 5e-148 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Potri.001G365100 [exp] 433 / 1e-147 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.012G089900 [exp] 424 / 5e-144 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10040120 pacid=23174034 polypeptide=Lus10040120 locus=Lus10040120.g ID=Lus10040120.BGIv1.0 annot-version=v1.0 ATGGATGAACAACATCTCTTTCGATTCCCACTGCCACCAATATTTCTCTTCTTCTCCGCCATCTTAATAGTAGTATGGAAGATCAAGACGACATCGTCCA AAAGCAACCTTCCGCCGGCCCCGCCGTGGAAGCTGCCGGTGATAGGCCACATGCTCCAATTAGCTGTTGGATCCCAAACCCACCACCGCCTCCGTGATCT AGCCAAAAGTTACGGGCCCGATCTCATGTTCCTCCAGCTGGGGGAGACTCGAAACGTCGTCGTTTCCTCCGCCAAGTCCGCAAAAGAAGTGATGAAGACC CACGACATCAATTTCTCCAACAGGCCGATCCTGCTCGCCGGGACCGTCTTGGCCTACGACTCGACAGACGTGGCGCTGGCGCCCTACGGTCCGTACTGGC GGCAGCTGAAGAAGATATGCACAGTGGAGCTGCTCAGCTTGAAGCAGGTACAATCCTTTTGCAGCATTCGCGAAGAGGAGGTCTCCAGTTACATCGAAAG GATATCATCCATGGCGGCCTCTGGTGTTAATGTCGACTTGAGCAAGGAGTCGAGGATCTACACGTCAAGTGTGATAGCCAGGTCAGCGTTTGGCGAGAAG TACGGGGAGGCAGAGGAGTTCATGAGTCTCCTCAAATACAGTCTGGAGTTGGCTGGAGGTTTCAGCGTGGAGGATATGTTCCCTTCCATGACGTGGCTCC ACGTGTTATTCGGTCTCAGGTCGAGGCTGGAGAAGATTAGCCGAGGATTTGACAGGATCCTTGATGACATCATCAATGAACATAAACTACGACAACGTGG ACATGCTGAGGTGGAGGAAAGAGGTGATCTTGTGGATATCCTACTCAAGGTCCAGAAGGAGAATGGGGGGCTCGAATTCCCTTTAACCGACGACAACATT AAAGCCATAATCTTCGATGTGTTTGCGGGTGGGAGTGAAAGTACAAGTTCAGTTATCGAATGGGCAATGTCTGAAATGCTACGAAATCCCCGCGTTCTTA AAAAGGCGCAAGAAGAGGTTCGACAGTTCCCACATCTTTTTAACGAGAGCAAGAATCTATTCGAAGAAGCGAACATTGGCAAGCTGAAGTATTTGAAGCT GGTAATCAAAGAAGCCTTGAGATTACATCCGCCAATCGCAGTACTGCTTCCCAGGGAAAACACAGAGGGAGGAACAGAGAAGAGGACGATGAGCTGTTCT GATCAGTGCAACGATGACTGTGAGATCGATGGATATATCGTACAGGCCAACACTAAAGTGATCATCAATGCTTGGGCAATTGGACGTGATCCTAAATGCT GGACGCAACCAAACACGTTTTACCCCGAAAGGTTCCTTGATAACGACGTTGACTATAAGGGATTGAATTTCGAATTTATTCCTTTTGGCGCTGGAAGAAG AATCTGTCCTGGGATCTCGTATGGTATGGCTACTATAGAACTCGTACTGTCTAATTTGTTGTACCATTTTGATTGGCAACTTCCAGAGAGTAGGCCGTAT GAAGAACTCGACATGACGGAGGCGTTTGGAGTGAGCATAAGCAGGAAAACCAATCTTTACTTGGTCCCAATCCCATATCATGCCCATGCTTAA
AA sequence Show only first row Show all	>Lus10040120 pacid=23174034 polypeptide=Lus10040120 locus=Lus10040120.g ID=Lus10040120.BGIv1.0 annot-version=v1.0 MDEQHLFRFPLPPIFLFFSAILIVVWKIKTTSSKSNLPPAPPWKLPVIGHMLQLAVGSQTHHRLRDLAKSYGPDLMFLQLGETRNVVVSSAKSAKEVMKT HDINFSNRPILLAGTVLAYDSTDVALAPYGPYWRQLKKICTVELLSLKQVQSFCSIREEEVSSYIERISSMAASGVNVDLSKESRIYTSSVIARSAFGEK YGEAEEFMSLLKYSLELAGGFSVEDMFPSMTWLHVLFGLRSRLEKISRGFDRILDDIINEHKLRQRGHAEVEERGDLVDILLKVQKENGGLEFPLTDDNI KAIIFDVFAGGSESTSSVIEWAMSEMLRNPRVLKKAQEEVRQFPHLFNESKNLFEEANIGKLKYLKLVIKEALRLHPPIAVLLPRENTEGGTEKRTMSCS DQCNDDCEIDGYIVQANTKVIINAWAIGRDPKCWTQPNTFYPERFLDNDVDYKGLNFEFIPFGAGRRICPGISYGMATIELVLSNLLYHFDWQLPESRPY EELDMTEAFGVSISRKTNLYLVPIPYHAHA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10040120 [exp]	0	1
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10003794 [exp]	3.0	0.8763
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10004076 [exp]	4.9	0.8722
					Lus10001872 [exp]	10.3	0.8948
AT1G09600			Protein kinase superfamily pro...		Lus10008925 [exp]	13.3	0.7290
AT1G31670			Copper amine oxidase family pr...		Lus10010539 [exp]	14.9	0.8909
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10026279 [exp]	18.6	0.8870
					Lus10009393 [exp]	21.0	0.8864
AT3G19550			unknown protein		Lus10013900 [exp]	22.2	0.8727
AT3G05950			RmlC-like cupins superfamily p...		Lus10038456 [exp]	23.8	0.8828
					Lus10029617 [exp]	25.4	0.8786

Compare expression of checked genes

Lus10040120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.