Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13870 493 / 5e-178 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT2G06850 478 / 2e-172 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT3G23730 315 / 1e-107 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G65730 311 / 3e-106 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT4G14130 309 / 2e-105 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT4G03210 308 / 5e-105 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) AT5G57550 295 / 3e-100 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT4G37800 295 / 6e-100 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT5G57560 290 / 3e-98 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT1G11545 288 / 3e-97 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030923 [exp] 609 / 0 AT5G13870 491 / 3e-177 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10011052 [exp] 528 / 0 AT5G13870 507 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10003022 [exp] 528 / 0 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10039715 [exp] 325 / 1e-111 AT4G03210 441 / 1e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10018503 [exp] 321 / 5e-110 AT4G03210 439 / 9e-157 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10010938 [exp] 308 / 4e-105 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031586 [exp] 308 / 7e-105 AT4G03210 446 / 9e-160 xyloglucan endotransglucosylase/hydrolase 9 (.1.2) Lus10011597 [exp] 306 / 4e-104 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10039643 [exp] 305 / 8e-104 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071000 [exp] 524 / 0 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.003G159700 [exp] 523 / 0 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 496 / 3e-179 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.002G060500 [exp] 315 / 7e-108 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060400 [exp] 313 / 2e-107 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201200 [exp] 313 / 3e-107 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.007G008500 [exp] 312 / 8e-107 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.005G201250 [exp] 311 / 2e-106 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.014G146100 [exp] 306 / 2e-104 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 305 / 5e-104 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10040121 pacid=23173910 polypeptide=Lus10040121 locus=Lus10040121.g ID=Lus10040121.BGIv1.0 annot-version=v1.0 ATGGCTACGAGGAACATGGTGCCTCTGGTGCTGATGATTGCCATGCTGCTTTGTGGAACAACAATGGCGCTTGCCCCAAGGAAACCAGTCCCAGTCCCAT TCGGCAGGAACTACGCCCCTACTTGGGCTTTCGACCACATCAAGTACTTCAACGGCGGCTCCGAGATTCAGCTCCACTTGGACAAATACACCGGGACTGG ATTCCAATCAAAAGGGTCATACTTGTTCGGACACTTCAGTATGCAGATGAAGTTGGTCCCCGGAGATTCTGCCGGAACCGTTACTGCTTTCTACCTATCA TCGCAAAACTCGGAGCATGACGAGATAGATTTCGAGTTCTTGGGGAACAGAACAGGGCAGCCTTACATTCTACAAACAAACGTGTTCACCGGCGGGAAAG GTGACAGGGAACAGAGGATATACCTCTGGTTTGACCCAACCAAAGCTTACCATTCCTACTCCGTCCTCTGGACCTCCAACATCATTGCGTTCTTTGTGGA CGATGTGCCAATCAGAGTGTTTAAGAATCTCAAGAACTTGGGAGTGAAGTTCCCATTCGAGCAGCCGATGAAGATATACTCCAGCCTATGGAACGCCGAC GACTGGGCCACCAGGGGAGGTTTGGAGAAGACCGATTGGTCCAAGGCTCCGTTCATCGCGTCCTACAGGGAGTTCCACGTGGACGGCTGCGAGGCGTCGG TGCAGGCTAAGTTCTGTGCGACCCAGGGGAAGAGATGGTGGGACCAGAAGGAGTTCCAGGACCTTGACGCTTATCAGTACCGTAGGCTGAAGTGGGTCCG CCAGAGGTTCACCATTTACAACTACTGTACCGACCGGGTCCGGTACCCTTTGCTGCCCGCCGAGTGCAGACCTGACCGTGATATTTAA
AA sequence Show only first row Show all	>Lus10040121 pacid=23173910 polypeptide=Lus10040121 locus=Lus10040121.g ID=Lus10040121.BGIv1.0 annot-version=v1.0 MATRNMVPLVLMIAMLLCGTTMALAPRKPVPVPFGRNYAPTWAFDHIKYFNGGSEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLS SQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHSYSVLWTSNIIAFFVDDVPIRVFKNLKNLGVKFPFEQPMKIYSSLWNAD DWATRGGLEKTDWSKAPFIASYREFHVDGCEASVQAKFCATQGKRWWDQKEFQDLDAYQYRRLKWVRQRFTIYNYCTDRVRYPLLPAECRPDRDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10040121 [exp]	0	1
AT1G29640			Protein of unknown function, D...		Lus10011993 [exp]	3.7	0.7988
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	10.7	0.7935
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	17.9	0.7912
AT5G16790		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10030532 [exp]	24.5	0.7561
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10004558 [exp]	25.5	0.7874
					Lus10041110 [exp]	34.4	0.7930
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	35.1	0.7837
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	43.0	0.7459
AT1G03610			Protein of unknown function (D...		Lus10039803 [exp]	82.7	0.7321
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10002206 [exp]	109.7	0.6843

Compare expression of checked genes

Lus10040121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.