Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47890 140 / 8e-45 NADH-ubiquinone oxidoreductase B8 subunit, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030922 [exp] 174 / 4e-58 AT5G47890 149 / 2e-48 NADH-ubiquinone oxidoreductase B8 subunit, putative (.1) Lus10011053 [exp] 170 / 9e-57 AT5G47890 155 / 4e-51 NADH-ubiquinone oxidoreductase B8 subunit, putative (.1) Lus10003023 [exp] 169 / 3e-56 AT5G47890 155 / 4e-51 NADH-ubiquinone oxidoreductase B8 subunit, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071900 [exp] 158 / 4e-52 AT5G47890 145 / 8e-47 NADH-ubiquinone oxidoreductase B8 subunit, putative (.1) Potri.003G159100 [exp] 150 / 8e-49 AT5G47890 152 / 1e-49 NADH-ubiquinone oxidoreductase B8 subunit, putative (.1) Potri.013G126200 [exp] 39 / 5e-05 AT3G59650 202 / 8e-69 mitochondrial ribosomal protein L51/S25/CI-B8 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF05047 [flax] [poplar] L51_S25_CI-B8 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Representative CDS sequence Show only first row Show all	>Lus10040122 pacid=23173878 polypeptide=Lus10040122 locus=Lus10040122.g ID=Lus10040122.BGIv1.0 annot-version=v1.0 ATGGCGTGGAGAGGGCAGCTTTCTCGGAATCTCAAGGAGCTTAGGATCCTTCTCTGCCAGTCCTCTCCTTCAAGCTCCTCCACTAGAGCTTTCGTGGAGA AGAATTACAAGGATCTCAAGACTCTCAACCCCAAACTCCCAATCTTGATTCGCGAATGCAGGGGTGTTGAGCCCCAGCTCTGGGCTAGATACGACATGGG CGTTGAGAGAGGCGTTCGTTTGGAGAGCAAGGACGAGTCGCAGATCTCCAAGGCACTTGAAGAACTTGTAAGAGTAGGTGCTGCACTCAAACAATGA
AA sequence Show only first row Show all	>Lus10040122 pacid=23173878 polypeptide=Lus10040122 locus=Lus10040122.g ID=Lus10040122.BGIv1.0 annot-version=v1.0 MAWRGQLSRNLKELRILLCQSSPSSSSTRAFVEKNYKDLKTLNPKLPILIRECRGVEPQLWARYDMGVERGVRLESKDESQISKALEELVRVGAALKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10040122 [exp]	0	1
AT1G48160			signal recognition particle 19...		Lus10011152 [exp]	3.2	0.8928
AT3G14080			Small nuclear ribonucleoprotei...		Lus10008124 [exp]	3.5	0.8643
AT3G23390			Zinc-binding ribosomal protein...		Lus10013436 [exp]	5.1	0.8719
AT2G18196			Heavy metal transport/detoxifi...		Lus10010147 [exp]	6.3	0.8626
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10010345 [exp]	6.7	0.8425
					Lus10005391 [exp]	8.9	0.8464
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	13.6	0.8555
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	14.2	0.8544
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	14.7	0.8383
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10014951 [exp]	14.9	0.8073

Compare expression of checked genes

Lus10040122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.