Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22450 122 / 4e-36 ATCOX6B2, COX6B CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) AT4G28060 118 / 1e-35 Cytochrome c oxidase, subunit Vib family protein (.1) AT5G57815 118 / 1e-35 Cytochrome c oxidase, subunit Vib family protein (.1) AT1G32710 110 / 5e-32 Cytochrome c oxidase, subunit Vib family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008716 [exp] 125 / 4e-37 AT1G22450 173 / 4e-55 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10010345 [exp] 117 / 3e-35 AT1G22450 142 / 4e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10036478 [exp] 116 / 7e-35 AT1G22450 146 / 2e-46 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Lus10020941 [exp] 93 / 6e-24 AT1G22450 138 / 9e-41 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G162100 [exp] 125 / 2e-37 AT1G22450 152 / 4e-47 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1) Potri.018G099900 [exp] 120 / 9e-37 AT5G57815 147 / 3e-48 Cytochrome c oxidase, subunit Vib family protein (.1) Potri.002G100000 [exp] 96 / 1e-25 AT1G22450 123 / 2e-35 CYTOCHROME C OXIDASE 6B2, cytochrome C oxidase 6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [flax] [poplar] CHCH PF02297 [flax] [poplar] COX6B Cytochrome oxidase c subunit VIb
Representative CDS sequence Show only first row Show all	>Lus10040123 pacid=23174229 polypeptide=Lus10040123 locus=Lus10040123.g ID=Lus10040123.BGIv1.0 annot-version=v1.0 ATGTCGGCGGCGCAGGTGGATCCACACGACAAGATGAGGTCGAGGGACGTGAACAAAGTAGCTCGTGGAGAACAAGCTCCAAGGCCTCCTCACGAGCCTG GTCAAATCAGTCAACGCCCTTCCCAACCTGATCCAGACCCTCGCCATTACCATCATGATGACCGTGACCAACTTATCCACAAGTTGACAGAGCCAGGAAC AGCGCCCGCTGACAAGCGTTTCCCAACCACCAACCAAACCCGACACTGCTACACCCGTTACATCGAGTACCACAGGTGCCTTCAGGAGAAGGATGAAGAA CACGTAGGTGAATGCGAGAAACTTGCCAAGTATTATCGCGCTCTTTGCCCCTCTGAGTGGATTGAGAGGTGGAATGAGCAGAGGGAACAGGGCATCTTCC CAGGGCCCATCTGA
AA sequence Show only first row Show all	>Lus10040123 pacid=23174229 polypeptide=Lus10040123 locus=Lus10040123.g ID=Lus10040123.BGIv1.0 annot-version=v1.0 MSAAQVDPHDKMRSRDVNKVARGEQAPRPPHEPGQISQRPSQPDPDPRHYHHDDRDQLIHKLTEPGTAPADKRFPTTNQTRHCYTRYIEYHRCLQEKDEE HVGECEKLAKYYRALCPSEWIERWNEQREQGIFPGPI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22450		ATCOX6B2, COX6B	CYTOCHROME C OXIDASE 6B2, cyto...		Lus10040123 [exp]	0	1
					Lus10003272 [exp]	4.4	1.0000
					Lus10010826 [exp]	6.2	1.0000
					Lus10022108 [exp]	7.5	1.0000
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	8.7	1.0000
AT3G47090			Leucine-rich repeat protein ki...		Lus10028479 [exp]	9.7	1.0000
AT2G22180			hydroxyproline-rich glycoprote...		Lus10000688 [exp]	10.0	1.0000
					Lus10000824 [exp]	10.5	1.0000
					Lus10030783 [exp]	10.7	1.0000
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10003626 [exp]	11.0	1.0000
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	11.4	1.0000

Compare expression of checked genes

Lus10040123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.