Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66160 155 / 2e-45 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT5G37490 154 / 1e-44 ARM repeat superfamily protein (.1) AT3G52450 135 / 1e-37 PUB22 plant U-box 22 (.1) AT1G49780 134 / 2e-37 PUB26 plant U-box 26 (.1) AT2G35930 133 / 4e-37 PUB23 plant U-box 23 (.1) AT3G19380 131 / 3e-36 PUB25 plant U-box 25 (.1) AT3G11840 110 / 2e-28 PUB24 plant U-box 24 (.1) AT5G64660 96 / 2e-23 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G18710 95 / 6e-23 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT3G46510 94 / 3e-22 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001079 [exp] 355 / 1e-122 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10016166 [exp] 130 / 1e-35 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10021267 [exp] 129 / 3e-35 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10029393 [exp] 128 / 4e-35 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10013584 [exp] 124 / 9e-34 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10004189 [exp] 116 / 2e-33 AT1G66160 75 / 7e-17 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10000800 [exp] 122 / 7e-33 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 119 / 1e-31 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10004191 [exp] 108 / 4e-27 AT3G11840 300 / 2e-95 plant U-box 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G042600 [exp] 212 / 3e-67 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.015G031000 [exp] 208 / 1e-65 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1) Potri.017G135000 [exp] 184 / 2e-56 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.004G083900 [exp] 181 / 4e-55 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.008G137700 [exp] 174 / 1e-52 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 172 / 9e-52 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.009G016200 [exp] 145 / 8e-42 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.009G100200 [exp] 141 / 5e-40 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.004G140100 [exp] 140 / 2e-39 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.016G069400 [exp] 137 / 2e-38 AT3G52450 511 / 0.0 plant U-box 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10040124 pacid=23173989 polypeptide=Lus10040124 locus=Lus10040124.g ID=Lus10040124.BGIv1.0 annot-version=v1.0 ATGGCGTTTTGGAGAAGGAAAAGGATCGCTGCCAATCTGGACAGCGACAGCAAGCACAAGAATCACTCAAGGATTAGCGGAAAGAAGAAGGATATAGAAT CGCTTCATCAGGAAGAAGAGAAAGCTGTTGTGCTTCCGACCCATTTCCTCTGCCCGATATCTCTTGACCTGATGACCGATCCGGTCACATTGTCCTCCGG CATCTCCTACGACCGTGACAGCATCGAGACCTGGCTTAAAGGCGGCAACTTCACTTGCCCAGTCACCAATCAGACACTCTTGACCTTCGACTTGGTACCC AACCACTCCCTCCGCCGTATGATTCAAGACTGGTGCGTTCAGAACGGCAGATTCGGCGTCGAGAGAATCCCTACTCCCAGAGTCCCTGTTTCCTCCTCTC AAATCTCCGCCGTCCTCCTCCGGTTGGAGGATTCCGCCGCGAGATTGAACGTGTCAGAGACCATGGACGCCTTGCATAAGATTAACAGCTGGGGAAACGA GAGCGAGAGGAATCGATTGTGTATTGTCTCCGCCGGCCTGCTCCGCGCCCGCCCTCGCCGCCCCGTGCGACGGATTCGCCGGCGGCGAATCCGTCGGAGT ACTGGAGCAGCTGCTAGCTTCGATTAG
AA sequence Show only first row Show all	>Lus10040124 pacid=23173989 polypeptide=Lus10040124 locus=Lus10040124.g ID=Lus10040124.BGIv1.0 annot-version=v1.0 MAFWRRKRIAANLDSDSKHKNHSRISGKKKDIESLHQEEEKAVVLPTHFLCPISLDLMTDPVTLSSGISYDRDSIETWLKGGNFTCPVTNQTLLTFDLVP NHSLRRMIQDWCVQNGRFGVERIPTPRVPVSSSQISAVLLRLEDSAARLNVSETMDALHKINSWGNESERNRLCIVSAGLLRARPRRPVRRIRRRRIRRS TGAAASFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	0	1
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	1.4	0.9961
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	1.7	0.9962
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	1.7	0.9936
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	3.9	0.9923
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	4.0	0.9908
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10028509 [exp]	4.2	0.9921
					Lus10040445 [exp]	4.2	0.9905
AT4G04450	WRKY	ATWRKY42, WRKY4...	WRKY family transcription fact...		Lus10020023 [exp]	5.7	0.9923
AT3G54200			Late embryogenesis abundant (L...		Lus10032671 [exp]	5.8	0.9846
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	6.5	0.9862

Compare expression of checked genes

Lus10040124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.