Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02840 154 / 1e-44 ARM repeat superfamily protein (.1) AT5G37490 112 / 2e-28 ARM repeat superfamily protein (.1) AT1G66160 106 / 2e-26 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT2G35930 86 / 3e-19 PUB23 plant U-box 23 (.1) AT3G52450 84 / 1e-18 PUB22 plant U-box 22 (.1) AT3G11840 74 / 4e-15 PUB24 plant U-box 24 (.1) AT3G49810 72 / 3e-14 ARM repeat superfamily protein (.1) AT5G65920 67 / 1e-12 ARM repeat superfamily protein (.1) AT3G19380 63 / 3e-11 PUB25 plant U-box 25 (.1) AT1G49780 62 / 4e-11 PUB26 plant U-box 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001079 [exp] 437 / 2e-154 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10019842 [exp] 76 / 1e-16 AT1G49780 276 / 3e-92 plant U-box 26 (.1) Lus10021267 [exp] 79 / 2e-16 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10014073 [exp] 75 / 2e-15 AT1G49780 281 / 2e-92 plant U-box 26 (.1) Lus10029393 [exp] 74 / 5e-15 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10013584 [exp] 73 / 1e-14 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10016166 [exp] 69 / 3e-13 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10004095 [exp] 63 / 9e-12 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10024703 [exp] 58 / 2e-10 AT1G16916 66 / 3e-15 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G042600 [exp] 234 / 4e-75 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.015G031000 [exp] 234 / 4e-75 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1) Potri.008G137700 [exp] 175 / 5e-52 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 170 / 4e-50 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.017G135000 [exp] 150 / 2e-42 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.004G083900 [exp] 149 / 4e-42 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.006G202600 [exp] 81 / 2e-17 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.016G069400 [exp] 78 / 3e-16 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 76 / 1e-15 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.009G100200 [exp] 75 / 2e-15 AT1G49780 515 / 0.0 plant U-box 26 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040125 pacid=23173894 polypeptide=Lus10040125 locus=Lus10040125.g ID=Lus10040125.BGIv1.0 annot-version=v1.0 ATGCTTCCCATCGTCGACACGGAAGCTATCTGGCGATTGGGATCGCCGGAGTCGGTGAAAGCACTCGTCAACTTCCTGAAACCAAACAGCAACCGAAAGC TCGCCGGAGACGTCTCGGCAAAGCACAACGCCCTCGCCGCTCTTAAGGAGCTGCTTACGTCTACTTCTTCCTCTTCGGTAGCGGAATCGATGATGGAAAT CGAAGGATTGGACAAAATCCTGTTCCGGTTCCTCAGATCCCCAATTTCCCCGGCCATCACCAAATCGACATTAACCCTAGTTTTCAACCTCGTCCAGATC TCAACCACGAAAACCGAGCAATTGAAGTCCTCGCTGGTATCCATGGGAGCAGTGGACCTACTCCTGGAGATCACAATCGATTTCTCCACGTCGTCCAAGA GCATAAGCGAGAAGGCGTTGGGAGTTCTCGACAAGCTATGCGACTCCGCCGAAGGCAGAGCCGCCGCGTCGCGTAACTCACTAACGGTGCCACTTCTAGT GAAGAAGATACTGAGGATATCGTCGGCGGCAACGGGGTTCTCCGTGTCGGTGATCTGGAAGCTAGGGAAATGCGAGCAGAAGGCGCTGATGGAAGGGCTT CAAGTAGGGGCGTTTCAGAAGCTGGTGCTGGTATTGCAGCTTGGATGTGGGGATGAGACGAAGGAGAAGGCTACAGCGGTTCTGAAGCTGATGAATCCTT ACAGGAATGAGTTCGAGTGCACAGAGTCTGTTGATTTCAAGAACCTGAAGCGATCATTCTGA
AA sequence Show only first row Show all	>Lus10040125 pacid=23173894 polypeptide=Lus10040125 locus=Lus10040125.g ID=Lus10040125.BGIv1.0 annot-version=v1.0 MLPIVDTEAIWRLGSPESVKALVNFLKPNSNRKLAGDVSAKHNALAALKELLTSTSSSSVAESMMEIEGLDKILFRFLRSPISPAITKSTLTLVFNLVQI STTKTEQLKSSLVSMGAVDLLLEITIDFSTSSKSISEKALGVLDKLCDSAEGRAAASRNSLTVPLLVKKILRISSAATGFSVSVIWKLGKCEQKALMEGL QVGAFQKLVLVLQLGCGDETKEKATAVLKLMNPYRNEFECTESVDFKNLKRSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	0	1
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	1.4	0.9963
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	1.7	0.9962
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10034092 [exp]	2.8	0.9944
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10002450 [exp]	3.2	0.9942
AT1G35210			unknown protein		Lus10010343 [exp]	3.2	0.9949
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	3.2	0.9962
					Lus10040445 [exp]	4.5	0.9915
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	4.9	0.9931
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041973 [exp]	4.9	0.9957
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	5.2	0.9944

Compare expression of checked genes

Lus10040125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.