Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73500 144 / 1e-42 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 123 / 1e-34 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT3G06230 109 / 1e-29 ATMKK8 MAP kinase kinase 8 (.1) AT3G21220 98 / 7e-25 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 97 / 2e-24 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT1G32320 79 / 1e-17 ATMKK10 MAP kinase kinase 10 (.1) AT5G56580 62 / 9e-12 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT4G26070 62 / 9e-12 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT1G09600 62 / 1e-11 Protein kinase superfamily protein (.1) AT1G57700 62 / 1e-11 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001081 [exp] 137 / 7e-41 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10037339 [exp] 84 / 2e-20 AT1G51660 226 / 4e-73 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10035764 [exp] 84 / 1e-19 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10012938 [exp] 64 / 3e-12 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10034986 [exp] 64 / 3e-12 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10008925 [exp] 61 / 5e-11 AT1G09600 643 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 59 / 2e-10 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 59 / 2e-10 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1) Lus10001285 [exp] 58 / 4e-10 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G043200 [exp] 165 / 9e-51 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.015G030700 [exp] 160 / 7e-49 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.008G183700 [exp] 110 / 8e-30 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.010G049500 [exp] 110 / 1e-29 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.001G138800 [exp] 99 / 1e-25 AT1G32320 231 / 7e-75 MAP kinase kinase 10 (.1) Potri.008G009800 [exp] 88 / 5e-21 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G249300 [exp] 87 / 1e-20 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.006G146500 [exp] 70 / 2e-14 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G050800 [exp] 70 / 2e-14 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 66 / 5e-13 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040127 pacid=23174086 polypeptide=Lus10040127 locus=Lus10040127.g ID=Lus10040127.BGIv1.0 annot-version=v1.0 ATGGCTGTCGTCCGCGAACGCCGCCAGCTCAATCTCCGCCTCCCTGAACTCACAGAACGCCGCCCTCGCTTCCCCTTACCTCTCCACCCGTCTTCCGCCA CCACCACCACCACTAATTCGTCTTCCTCCCTCATCACCTCCGACCTAGAAAAGCTCTGCGTCCTCGGACACGGCAACGGCGGCACGGTTTACAAAGTCCG TAACCGCCGCACCTCCCAGATTTACGCCCTCAAGCTCGTCCGCGGCGACAGTGACCCCTTAATCCGCCGCCAGATCCTCCGGGAGATGGAGATCCTCCGC CGCACCGATTCTCCCCACATCGTCAAGTCCCACGGCATCCACGAGACCCCCGCCGGCGACATCAAGATCCTAATGGAGTACATGGACCTCGGAACGCTCG ATTCGCTTCTGAAAACCGAAGGCAGAGATTTCTTCACCGAGCAGAGGCTCGCAGGAATCGGCCGTCAGGTGCTCGCCGGGCTGAACGCCAGGTGCTCGCC GGGCTGA
AA sequence Show only first row Show all	>Lus10040127 pacid=23174086 polypeptide=Lus10040127 locus=Lus10040127.g ID=Lus10040127.BGIv1.0 annot-version=v1.0 MAVVRERRQLNLRLPELTERRPRFPLPLHPSSATTTTTNSSSSLITSDLEKLCVLGHGNGGTVYKVRNRRTSQIYALKLVRGDSDPLIRRQILREMEILR RTDSPHIVKSHGIHETPAGDIKILMEYMDLGTLDSLLKTEGRDFFTEQRLAGIGRQVLAGLNARCSPG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	0	1
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040128 [exp]	1.0	0.9436
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	3.2	0.8775
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	3.5	0.8717
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10002853 [exp]	4.9	0.8714
AT4G19950			unknown protein		Lus10038358 [exp]	8.4	0.8576
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10010753 [exp]	8.5	0.8371
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	8.7	0.8253
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	8.8	0.8544
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018328 [exp]	9.0	0.8127
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Lus10010752 [exp]	9.2	0.8541

Compare expression of checked genes

Lus10040127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.