Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73500 187 / 7e-60 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 185 / 4e-59 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT1G51660 160 / 5e-49 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT3G21220 159 / 1e-48 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT3G06230 139 / 2e-41 ATMKK8 MAP kinase kinase 8 (.1) AT1G32320 124 / 2e-35 ATMKK10 MAP kinase kinase 10 (.1) AT4G29810 114 / 2e-31 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT4G26070 103 / 2e-27 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT5G40440 100 / 2e-25 ATMKK3 mitogen-activated protein kinase kinase 3 (.1) AT5G56580 99 / 2e-25 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001081 [exp] 286 / 3e-100 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10035764 [exp] 160 / 4e-49 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10027623 [exp] 115 / 2e-31 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10011945 [exp] 115 / 7e-31 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10012938 [exp] 94 / 1e-23 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10001137 [exp] 94 / 3e-23 AT5G40440 711 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10022265 [exp] 91 / 6e-22 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1) Lus10034986 [exp] 88 / 2e-21 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10003677 [exp] 76 / 2e-18 AT3G21220 102 / 3e-27 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030700 [exp] 233 / 1e-77 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.012G043200 [exp] 218 / 4e-72 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.008G009800 [exp] 160 / 3e-49 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G249300 [exp] 160 / 3e-49 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G049500 [exp] 154 / 4e-47 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.008G183700 [exp] 153 / 1e-46 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.018G050800 [exp] 111 / 4e-30 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.006G146500 [exp] 106 / 2e-28 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 106 / 3e-28 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.001G345500 [exp] 94 / 4e-23 AT5G40440 851 / 0.0 mitogen-activated protein kinase kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040128 pacid=23173823 polypeptide=Lus10040128 locus=Lus10040128.g ID=Lus10040128.BGIv1.0 annot-version=v1.0 ATGGAGGTCAAAATCGCCGATTTCGGAGTGAGCAAGATCATGTGCAGGACGCTTGACGCCTGTAATTCCTACGTGGGGACCTGCGCTTACATGAGCCCCG AGAGATTCGACCCCGATTCTTACGGAGGGAATTACAACGGTTACGCCGCGGATATATGGAGCTTGGGACTGACGCTTCTGGAGCTTTATATGGGCCATTT CCCGTTTCTGCCTCCGGGGCAGAGGCCGAATTGGTCGAGTTTGATGTGCGCGATCTGTTTCGGGGAGGCGCCGCCGTTGCCGGAGGAGGCGTCGGAAGAT TTCAAGGGGTTTATCAAGTGTTGTTTGCAGAAGGATTCAAGTCAGAGGTTGACGGTGGCGGAGTTATTGGCTCACCCTTTCGTTACTAAAGCAGAGACGA CAACCCGGTGTTAG
AA sequence Show only first row Show all	>Lus10040128 pacid=23173823 polypeptide=Lus10040128 locus=Lus10040128.g ID=Lus10040128.BGIv1.0 annot-version=v1.0 MEVKIADFGVSKIMCRTLDACNSYVGTCAYMSPERFDPDSYGGNYNGYAADIWSLGLTLLELYMGHFPFLPPGQRPNWSSLMCAICFGEAPPLPEEASED FKGFIKCCLQKDSSQRLTVAELLAHPFVTKAETTTRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040128 [exp]	0	1
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	1.0	0.9436
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	1.4	0.9259
AT1G26800			RING/U-box superfamily protein...		Lus10036757 [exp]	3.7	0.8328
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Lus10010752 [exp]	3.9	0.8833
AT4G19950			unknown protein		Lus10038358 [exp]	5.7	0.8753
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034975 [exp]	5.9	0.8532
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018328 [exp]	7.1	0.8142
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	8.2	0.8075
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	8.9	0.8525
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10035329 [exp]	10.7	0.8059

Compare expression of checked genes

Lus10040128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.