Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47030 296 / 2e-103 ATPase, F1 complex, delta/epsilon subunit (.1) ATCG00470 39 / 0.0005 ATCG00470.1, ATPE ATP synthase epsilon chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001082 [exp] 377 / 2e-135 AT5G47030 315 / 6e-111 ATPase, F1 complex, delta/epsilon subunit (.1) Lus10011038 [exp] 335 / 1e-108 AT5G47040 1413 / 0.0 lon protease 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086100 [exp] 307 / 1e-107 AT5G47030 291 / 2e-101 ATPase, F1 complex, delta/epsilon subunit (.1) Potri.014G053000 [exp] 303 / 6e-106 AT5G47030 308 / 6e-108 ATPase, F1 complex, delta/epsilon subunit (.1) Potri.007G062142 [exp] 42 / 6e-05 ATCG00470 219 / 6e-75 ATP synthase epsilon chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02823 [flax] [poplar] ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Lus10040130 pacid=23173895 polypeptide=Lus10040130 locus=Lus10040130.g ID=Lus10040130.BGIv1.0 annot-version=v1.0 ATGTTCCGGCAGGTATCCCGTCTCCTCTCCCGATCCGTCTCTCAGCAGCAGCCCAAGACGGTGGTTGCTGCTCGAGCCTTTTCCTCCGATGTCCCGGCTA CGCCTACCGCGGACGCGACTTTCATCGAATCGTGGAAGAAGGTTATTCCCACTATCGATCCGCCTAAGACTCCTTCCTCCTTCATGAAGCCTCGCCCTCC AACTCCATCCACCATTCCCACTAAGCTCACTGTCAACTTTGTCCTTCCCTATGCTACCGAGCTATCCGCAAAAGAGGTTGACATGATCATCGTCCCAGCA ACGTCAGGGCACATGGGAGTGTTGCCCGGCCACGTTCCCACTATTGCAGAGCTGAAACCGGGAGTGATGTCAGTCCACGAAGGAAGTGATGTCTCGAAAT ACTTTGTCAGCAGCGGATTTGCATTCATCCATGGGAACTCAGTGGCCGATGTGATTGCTGTTGAGGCCGTGCCCATTGATCAGATTGATGCAAACTTGGT CCAGAAAGGAGTGGCAGAATTCAATCAGAAACTCAGCTCCGCCTCTACTGATCTCGAAAAGGCCGAAGCCCAGATAGGAGTGGATGTTTACAGCGCTCTT AACGCGGCACTCACAGGCTAA
AA sequence Show only first row Show all	>Lus10040130 pacid=23173895 polypeptide=Lus10040130 locus=Lus10040130.g ID=Lus10040130.BGIv1.0 annot-version=v1.0 MFRQVSRLLSRSVSQQQPKTVVAARAFSSDVPATPTADATFIESWKKVIPTIDPPKTPSSFMKPRPPTPSTIPTKLTVNFVLPYATELSAKEVDMIIVPA TSGHMGVLPGHVPTIAELKPGVMSVHEGSDVSKYFVSSGFAFIHGNSVADVIAVEAVPIDQIDANLVQKGVAEFNQKLSSASTDLEKAEAQIGVDVYSAL NAALTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	0	1
AT3G10920		MSD1, MEE33, AT...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10034222 [exp]	2.4	0.9180
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10043059 [exp]	3.0	0.9274
AT5G08060			unknown protein		Lus10017854 [exp]	3.7	0.9131
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10001313 [exp]	5.5	0.9247
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	5.7	0.9235
AT4G27070		TSB2	tryptophan synthase beta-subun...		Lus10011154 [exp]	8.0	0.9230
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10022844 [exp]	9.2	0.9077
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Lus10019706 [exp]	9.2	0.9217
AT4G03240		ATFH, FH	frataxin homolog (.1)		Lus10033750 [exp]	9.2	0.9104
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10014747 [exp]	11.0	0.8866

Compare expression of checked genes

Lus10040130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.