Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32730 239 / 3e-77 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001085 [exp] 616 / 0 AT1G32730 253 / 1e-82 unknown protein Lus10000258 [exp] 219 / 3e-70 AT1G32730 140 / 6e-40 unknown protein Lus10011037 [exp] 208 / 1e-65 AT1G32730 132 / 2e-36 unknown protein Lus10003008 [exp] 91 / 9e-23 AT1G32730 86 / 1e-21 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085901 [exp] 325 / 4e-110 AT1G32730 325 / 3e-110 unknown protein Potri.001G148500 [exp] 324 / 9e-110 AT1G32730 315 / 5e-106 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05142 [flax] [poplar] DUF702 Domain of unknown function (DUF702)
Representative CDS sequence Show only first row Show all	>Lus10040132 pacid=23174140 polypeptide=Lus10040132 locus=Lus10040132.g ID=Lus10040132.BGIv1.0 annot-version=v1.0 ATGGCAACATCCTCGCCGGCGCCTAGCAACATCCTCGCCGATGCCGCTGCCAACCCCGCCACGCCGGCCTCTTTACAGCGTATCGACGGAACGACACCTA AAACCCTCCGCGGCCTCAATAAACCCAAGTGTATTCAATGCGGAAACGTCGCTCGATCCAGGTGCCCATATCAATCCTGCAAAAGTTGCTGCTCAAAAGC CCAAAATCCATGTCTTATCCATGTTCTAAAAGCAAATGCAACCATTCCAGACAAGGCCCTGCCTTCAAATATTGCTCAGGTTGATCACCAATCAGTTGAT TTGTCTCCTTCCACAACTTCCCTTCGCGTTGCATCACTTCGGCAACTCTCCAACACTTTTTCCCAATTCAACAATGTGCACACTCCGCGTTCGAGAAAGC CACTTACCAAAAAGGAAGCTTTGGCCATCAACGAATGGAGATTTAAAAAGTTGAAGGAATATAGGGACGGAATTGCTGAAAAGGAAACTGAAGCTTTCGA TCGGTACATGCAAAACATCAGCTTGCTAGGGGAGACATTCTCGATCAAGCCCATGCAAGGTAACGATGATGCTGCGCTTGTGGATCCTAGGGTCAGCGAG AATCTCAGGAAGAAGAAACAACGGGTTGTCGACGAAGGACTTAGAAAGCTCGAGGAAATGGAGCTCGAAGGTGATAGAAGACCAGAAAAGGTGAAGCAGT GGTCCGATAGGGCTTCAACTTTCAATGATCTCATTGAGAAGTTGAATAAAGCACGAAATGAAGACGACCTTAAGTCTTGTCTGGAGATTAACTCCCAGCT CTCTGAAAGCCATGGCCCACCAGAAGCCGCCATATTAGATAATGTGGTTGAGTCGCAGACGAACAAGAGTGAACAGAAGGCGTCCTCCAGTAAGGCTATG GATTGGTTCTCTCAGGACCAACTTAGGCCAGTAGATATTGATCAGGAAACTGTTGGCAAGATCAACGCACATTTTACTTCCCTTAAGATAGCAAGTTTAT GA
AA sequence Show only first row Show all	>Lus10040132 pacid=23174140 polypeptide=Lus10040132 locus=Lus10040132.g ID=Lus10040132.BGIv1.0 annot-version=v1.0 MATSSPAPSNILADAAANPATPASLQRIDGTTPKTLRGLNKPKCIQCGNVARSRCPYQSCKSCCSKAQNPCLIHVLKANATIPDKALPSNIAQVDHQSVD LSPSTTSLRVASLRQLSNTFSQFNNVHTPRSRKPLTKKEALAINEWRFKKLKEYRDGIAEKETEAFDRYMQNISLLGETFSIKPMQGNDDAALVDPRVSE NLRKKKQRVVDEGLRKLEEMELEGDRRPEKVKQWSDRASTFNDLIEKLNKARNEDDLKSCLEINSQLSESHGPPEAAILDNVVESQTNKSEQKASSSKAM DWFSQDQLRPVDIDQETVGKINAHFTSLKIASL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32730			unknown protein		Lus10040132 [exp]	0	1
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	3.2	0.8964
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	5.8	0.8856
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	6.0	0.8595
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	11.5	0.8396
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10033083 [exp]	12.4	0.8702
AT1G49170			Protein of unknown function (D...		Lus10020853 [exp]	17.2	0.7950
					Lus10011007 [exp]	17.2	0.8573
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	17.3	0.8687
AT1G61470			Polynucleotidyl transferase, r...		Lus10007771 [exp]	21.6	0.8008
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	26.0	0.8105

Compare expression of checked genes

Lus10040132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.