Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17100 521 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001086 [exp] 873 / 0 AT4G17100 523 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G085600 [exp] 595 / 0 AT4G17100 506 / 1e-178 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0695 [flax] [poplar] EndoU PF09412 [flax] [poplar] XendoU Endoribonuclease XendoU
Representative CDS sequence Show only first row Show all	>Lus10040133 pacid=23173811 polypeptide=Lus10040133 locus=Lus10040133.g ID=Lus10040133.BGIv1.0 annot-version=v1.0 ATGGACGGCTTGATCAGAGGTCTGACGGACGTCGTTCTTGGCCACGACGGCAAAGATGAACGCGATGAACAACGACCGAGATCCAGCTGGGCCGAGGTCG TCTCAGGTGACAATGACGATCAGGATTCTGGCGAAAGCCATCCCGCCCGCAGGCAGCCGCCACATCACTCTGCTGCAGAGCAAGATCGGAGGGGAGGAAC AAGACGTGAGGAGTCCGAGATTGCAGATTCAAATTATTCAAGGCGGCCTCAAAAGGCTTCCTTTCAAGGAAATGGAACTGATGATTACCAGCAAAATCAG TGGGCTAGAGAGGAAGCATCAGAGAACAGTAATGATGGATGGGAGACAGTGGGCAAAAAGCTTCCCAAACAGCCACATAAGGTCGTGAAGGATAACTGGC ATGGATACAAACAAGCTGCATCGGAGCAAGAATACTCTGCAGAGTTTGAAGACAGTGAGGCGTTAGAGCCTTCAAAACAGGAGCTTTCTGACCTGTCATG TGCTTGCAATAAACTGTGGGAACTAGATGCAAACCGGCTGATTCCTGAAAAGGACTATCAGATTGACTGTGGCGAAGGGAAGAAAGTCTATCAGAAGGAT GACATGGCTGAAGGAAGCCTATTTTGCTGGCTGAGTGAAGATGTATTTAGAAAGCCTACTTATTCTCGATTCTGCTCTCTTCTCGATAACTACAACCCTA ATGAAGGCAGTAAAGAGGTTGTTACATCGGAAGAGAAGCAAGAGCAGGCTGCTTTTGTTGAAGAAATCAGCAGAACTGCGCCTATTAAATACCTTCACAA GTATCTTGCAGCTAAGGGTATTGTATCAGGAAATCGTGAAGATTTTAAAAGGTGTATGTCCAGCCTATGGTTCGATCTTTACAGTCGTGGTGGAACATAT GGTTCATCTTCTGCTTTTGAGCATGTGTTTGTGGGAGAAATCAAGCAGCGTGGGGAACAAGAAGTTTCTGGCTTCCACAACTGGCTTCAGTTCTATCTGG AGGAAGCCAAGGGGAATGTAAATTACCAAGGGTATATATTTCCTCGCCGACGTGGTCAGATTCCGGACTCCGAAAGCCAGTTGCTAACGATTCAGTTTGA ATGGAATGGAGTCATGAAGGCCGTTTCCAGCACTATGATTGGAGTCAGCCCAGAATTTGAGATGGCTCTCTACACCCTGTGCTTCTATGCCGGGGGAGAA GAGAATCACGTGGAGTTGGGTCCTTATTCCGTGAACATCAAATGCTACCGTATGGGCAACCGACTTGGGTCTGCATTCCCCATGGGCTGA
AA sequence Show only first row Show all	>Lus10040133 pacid=23173811 polypeptide=Lus10040133 locus=Lus10040133.g ID=Lus10040133.BGIv1.0 annot-version=v1.0 MDGLIRGLTDVVLGHDGKDERDEQRPRSSWAEVVSGDNDDQDSGESHPARRQPPHHSAAEQDRRGGTRREESEIADSNYSRRPQKASFQGNGTDDYQQNQ WAREEASENSNDGWETVGKKLPKQPHKVVKDNWHGYKQAASEQEYSAEFEDSEALEPSKQELSDLSCACNKLWELDANRLIPEKDYQIDCGEGKKVYQKD DMAEGSLFCWLSEDVFRKPTYSRFCSLLDNYNPNEGSKEVVTSEEKQEQAAFVEEISRTAPIKYLHKYLAAKGIVSGNREDFKRCMSSLWFDLYSRGGTY GSSSAFEHVFVGEIKQRGEQEVSGFHNWLQFYLEEAKGNVNYQGYIFPRRRGQIPDSESQLLTIQFEWNGVMKAVSSTMIGVSPEFEMALYTLCFYAGGE ENHVELGPYSVNIKCYRMGNRLGSAFPMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17100			unknown protein		Lus10040133 [exp]	0	1
AT4G33640			unknown protein		Lus10007087 [exp]	3.0	0.8912
AT2G22730			Major facilitator superfamily ...		Lus10019244 [exp]	3.5	0.8419
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037430 [exp]	5.2	0.8743
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040745 [exp]	5.9	0.8443
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10030884 [exp]	6.0	0.8754
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10032579 [exp]	11.5	0.8544
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10041352 [exp]	17.0	0.8063
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10039098 [exp]	19.6	0.7857
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10042324 [exp]	19.6	0.8235
AT3G27230			S-adenosyl-L-methionine-depend...		Lus10033164 [exp]	27.1	0.7839

Compare expression of checked genes

Lus10040133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.