Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17090 707 / 0 CT-BMY, BMY8, BAM3 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) AT3G23920 532 / 0 BAM1, BMY7, TR-BAMY BETA-AMYLASE 7, beta-amylase 1 (.1) AT4G15210 396 / 6e-133 BAM5, AT-BETA-AMY, BMY1, RAM1, ATBETA-AMY REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) AT2G32290 385 / 2e-127 BAM6, BMY5 BETA-AMYLASE 5, beta-amylase 6 (.1) AT4G00490 380 / 4e-126 BAM2, BMY9 BETA-AMYLASE 9, beta-amylase 2 (.1) AT5G55700 346 / 3e-113 BAM4, BMY6 BETA-AMYLASE 6, beta-amylase 4 (.1.2) AT2G45880 330 / 6e-105 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT5G45300 282 / 8e-87 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT5G18670 261 / 2e-80 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001087 [exp] 934 / 0 AT4G17090 781 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10011035 [exp] 733 / 0 AT4G17090 778 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10003005 [exp] 657 / 0 AT4G17090 709 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Lus10004396 [exp] 529 / 0 AT3G23920 848 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10023700 [exp] 515 / 2e-178 AT3G23920 783 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10004398 [exp] 449 / 4e-153 AT3G23920 649 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Lus10039701 [exp] 402 / 2e-133 AT4G15210 724 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10018491 [exp] 387 / 2e-128 AT4G15210 697 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Lus10039702 [exp] 381 / 5e-127 AT4G15210 694 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G148900 [exp] 749 / 0 AT4G17090 885 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.003G085500 [exp] 736 / 0 AT4G17090 868 / 0.0 BETA-AMYLASE 8, BETA-AMYLASE 3, chloroplast beta-amylase (.1) Potri.010G062900 [exp] 548 / 0 AT3G23920 908 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.008G174100 [exp] 542 / 0 AT3G23920 876 / 0.0 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.017G040800 [exp] 392 / 2e-130 AT4G15210 764 / 0.0 REDUCED BETA AMYLASE 1, ARABIDOPSIS THALIANA BETA-AMYLASE, beta-amylase 5 (.1.2) Potri.003G143500 [exp] 392 / 4e-130 AT3G23920 442 / 4e-149 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083800 [exp] 380 / 3e-126 AT4G00490 799 / 0.0 BETA-AMYLASE 9, beta-amylase 2 (.1) Potri.001G087600 [exp] 378 / 3e-125 AT3G23920 459 / 3e-156 BETA-AMYLASE 7, beta-amylase 1 (.1) Potri.014G083700 [exp] 369 / 5e-120 AT2G45880 863 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1) Potri.002G159300 [exp] 359 / 4e-116 AT2G45880 858 / 0.0 BETA-AMYLASE 4, beta-amylase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF01373 [flax] [poplar] Glyco_hydro_14 Glycosyl hydrolase family 14
Representative CDS sequence Show only first row Show all	>Lus10040134 pacid=23174019 polypeptide=Lus10040134 locus=Lus10040134.g ID=Lus10040134.BGIv1.0 annot-version=v1.0 ATGGCTCTTACACTAAGGTCATCAACATCCTTCATCAACCTAAATGACTACTCCTCCCTAAACAACAACAACAACATCATCATATCCTCAATCTCCTTCA AGCCAGCAAGATTATGTTCGATTCAAGCGATGTCGTCGAGCCATGTGCTGCTAGAACAACAACCCCACAGATCAGTTGAGAGGCTTCATGATCAAACGTT GTCAGGCTCTCATCATCATCACATCAGCAGCAGTACTAGTTCTAATGGGTCCTCGTCGTCCAAGGTGCCTGTTTTTGTGATGCTGCCGCTGGACACGGTG ACCCACGGAGGGAACCTGAACAAGCCACGGGCTATGAACGCCAGCTTGTTGGCTCTGAAGAGAGCTGGAGTTGAAGGGGTGATGGTGGATGCTTGGTGGG GGTTGGTTGAGAAAGATGGACCTCTGAGATATAACTGGGAAGGCTATGCTGAGCTTGTGGAGATGGTTAAGCATCATGGCTTGAAGCTTCAGGTTGTCAT GTCCTTTCATCAGTGTGGTGGCAACGTTGGTGATTCTTGCAGCATTCCTCTGCCTCCATGGGTGCTTGAAGAGATCAGCAAGAACCCAGACTTAGTATAC ACAGACAGATCAGGTCGCAGGAACCCAGAGTACATCTCTTTGGGTTGTGATTCCTTGGCTGTTCTAAGAGGAAGAACACCAATCCAAGTCTACTCTGATT ACATGAGAAGCTTCCGTGACAGATTCACAGATTACCTTGGACATGTTATTGTGGAAATCCAAGTAGGAATGGGTCCTTGTGGCGAACTGAGATACCCAGC ATACCCTACTGGTTCTGCTGTGTTGCTTACAAAAATCTTCTTCGTCTTTATACAGTACATGAGAGCATCACTAAAAGCATCAGCAGAGGAGCAAGAGAAG AAAGAATGGGGACAAGGAGGACCACACGATTCAGGCCAATACAACCAGTACCCTGAAGACACAGGCTTCTTCAAAAGAGACGGCACATGGAAAACAGAAT ACGGCCATTTCTTCCTGCAATGGTACTCATCAAAGCTTCTCCAACACGGCAACACCATCTTATCATCAGCGAAGTCCATCTTCAAAGGCACAGGAGCCAA GCTCTCTGGAAAAGTCGCAGGCATCCACTGGCACTACAGGACAAGGTCCCACGCAGCTGAACTCACTGCGGGATACTACAACACCAGACACCACGACGGG TACTTGCCTCTGGCGCAGATGTTCAGCAAGCACGGAGCGGTGTTGAACTTCACGTGCATGGAAATGAGAGACGGGGAGCAGCCAGAGAACGGGAGCTGCT CCCCGGAAGGGCTTGTGAAGCAGGTGAAGATGGCGACGAAAGCTTCTGGGACGGAACTCGCTGGGGAGAATGCTCTGGAGAGGTATGATCAGGCTGCTTA TAGACAGGTGGTGTCGACGAGTGGTGGTGGATTGGCTGCGTTTACCTACTTGAGGTTGAACAAGAGGCTGTTTGAGGAAGGGAACTGGAGGAACCTGGTT GAGTTTGTGAAGAACATGTCGGAGAGTGGAAGGAATCATAAGGGGTTGTTGCCGGAGTGTGATACTGCTAGGAGTGATTTGTATGTTGGTTTTGTGAAGG GGAAGAGTGTTAGGAAGGATAGTAAGGAGATTCTACTTGTGTAG
AA sequence Show only first row Show all	>Lus10040134 pacid=23174019 polypeptide=Lus10040134 locus=Lus10040134.g ID=Lus10040134.BGIv1.0 annot-version=v1.0 MALTLRSSTSFINLNDYSSLNNNNNIIISSISFKPARLCSIQAMSSSHVLLEQQPHRSVERLHDQTLSGSHHHHISSSTSSNGSSSSKVPVFVMLPLDTV THGGNLNKPRAMNASLLALKRAGVEGVMVDAWWGLVEKDGPLRYNWEGYAELVEMVKHHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVY TDRSGRRNPEYISLGCDSLAVLRGRTPIQVYSDYMRSFRDRFTDYLGHVIVEIQVGMGPCGELRYPAYPTGSAVLLTKIFFVFIQYMRASLKASAEEQEK KEWGQGGPHDSGQYNQYPEDTGFFKRDGTWKTEYGHFFLQWYSSKLLQHGNTILSSAKSIFKGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRHHDG YLPLAQMFSKHGAVLNFTCMEMRDGEQPENGSCSPEGLVKQVKMATKASGTELAGENALERYDQAAYRQVVSTSGGGLAAFTYLRLNKRLFEEGNWRNLV EFVKNMSESGRNHKGLLPECDTARSDLYVGFVKGKSVRKDSKEILLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10040134 [exp]	0	1
AT5G10990			SAUR-like auxin-responsive pro...		Lus10042374 [exp]	2.8	0.7935
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	3.2	0.8072
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10039003 [exp]	4.7	0.7288
AT2G07715			Nucleic acid-binding, OB-fold-...		Lus10037433 [exp]	6.9	0.7544
AT1G68490			unknown protein		Lus10038934 [exp]	7.9	0.8244
AT4G26260		MIOX4	myo-inositol oxygenase 4 (.1.2...		Lus10035005 [exp]	11.2	0.7764
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	15.2	0.7315
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Lus10005134 [exp]	15.4	0.7048
AT3G02555			unknown protein		Lus10027224 [exp]	21.0	0.7948
AT1G51140	bHLH	bHLH122	basic helix-loop-helix (bHLH) ...		Lus10031826 [exp]	21.4	0.6273

Compare expression of checked genes

Lus10040134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.