Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47070 451 / 3e-158 Protein kinase superfamily protein (.1) AT4G17660 412 / 1e-143 Protein kinase superfamily protein (.1) AT2G28940 379 / 2e-129 Protein kinase superfamily protein (.1.2) AT3G09830 359 / 5e-122 Protein kinase superfamily protein (.1.2) AT5G03320 350 / 2e-118 Protein kinase superfamily protein (.1) AT2G39110 333 / 7e-112 Protein kinase superfamily protein (.1) AT2G28930 331 / 5e-111 APK1B protein kinase 1B (.1.2.3) AT1G07570 329 / 1e-110 APK1A Protein kinase superfamily protein (.1.2.3) AT3G28690 327 / 6e-110 Protein kinase superfamily protein (.1.2.3) AT5G02290 322 / 3e-108 NAK Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001088 [exp] 699 / 0 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10038711 [exp] 365 / 1e-123 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 362 / 1e-122 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10037980 [exp] 359 / 4e-121 AT3G09830 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 343 / 4e-115 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023794 [exp] 332 / 2e-112 AT5G02290 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030668 [exp] 334 / 4e-111 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10006643 [exp] 332 / 4e-111 AT5G15080 495 / 2e-173 Protein kinase superfamily protein (.1) Lus10038087 [exp] 332 / 7e-111 AT5G15080 499 / 6e-175 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G149100 [exp] 539 / 0 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 506 / 8e-180 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.014G052700 [exp] 487 / 3e-172 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.009G031500 [exp] 384 / 1e-131 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 374 / 2e-127 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G036800 [exp] 360 / 1e-122 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G225300 [exp] 359 / 1e-121 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.006G126000 [exp] 355 / 7e-120 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240400 [exp] 339 / 2e-114 AT1G07570 590 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G066100 [exp] 336 / 4e-113 AT5G15080 503 / 6e-177 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040135 pacid=23174176 polypeptide=Lus10040135 locus=Lus10040135.g ID=Lus10040135.BGIv1.0 annot-version=v1.0 ATGAAGTGCTTCCCTAAAATCTTCAAGAGGAAATCGGGTTCAAACTCAGCTCCTCAGCCGTCGTCGTCATCGTCAGACGGGAACAATAAGTCGGCGGCTG TGGTGCGTAGTACAAGATCTTTGCCATCTCCGAGGAGCATACAGGAGCTTTACAAGGAGAAAGAGCAGAATTTGAGGGTATTCTCCATCAAGGAGCTTAA AGATGCAACCAATGGCTTCAATCGGTTGCTGAAGATTGGGGAAGGTGGGTTTGGGAGTGTCTACAAAGGGTCAGTTTTTGCAGCTACTACTGATTCTTCT GATGCTGGTGGTGAAGGTGAACGCTTGGTTGTTGCCATCAAGAAGCTCAACAAGCATGGTTTGCAGGGTCATAAGCAATGGGTTGCAGAGGTTCAGTTTC TTGGGATAGTGAACCATCCAAACCTAGTGAAGCTCTTGGGGTACTGCTCCGTAGACGACGAAAGAGGGATTCAACGGTTGTTGGTGTACGAGTACATGCC TAACAAGAGCTTAGAGGATCATCTCTTCAACAGAGGTTTACCTGTATTGTCATGGAGGAAACGACTCGAGATCATGCTTGGTGCTGCTCAAGGCCTAGCT TACCTACACTGCGGACTTGAAGTACCTGTGATCTATAGAGATTTCAAATGCTCGAATATACTACTGGATGTGGGGTTTAACCCCAAGCTCTCCGATTTCG GGCTGGCTAGAGAAGGACCAACTGGCGATCACACTCATGTGTCAACCGGGGTAGTTGGAACACATGGGTACGCAGCTCCGGAGTACATCGAGACAGGACA CCTCACAATCCACAGCGACCTGTGGAGTTTTGGAGTGGTCCTGTACGAAATCCTAACAGGAAGGCGGTCCCTGGACCTAAATCGGCCAACTTCGGAACAA AAGCTACTGAATTGGGTGAAGCAGTTTCCAGCTGACAGCAAGAAGCTGTGCATGATCATAGACCCACGCCTAAGAAACGGCTGCTCCATGACTTCAGCAA GAAGAGTCGCAAAGCTGGCAGACAAGTGCTTGAACAAGAACGCCAAAGATCGGCCGTCAATGGGAGAAGTGGTGGAGGTCTTGAAGCTTGCAATACAAGA CACAGAGGAGCCTGCAAATGGCACAACCAAATGA
AA sequence Show only first row Show all	>Lus10040135 pacid=23174176 polypeptide=Lus10040135 locus=Lus10040135.g ID=Lus10040135.BGIv1.0 annot-version=v1.0 MKCFPKIFKRKSGSNSAPQPSSSSSDGNNKSAAVVRSTRSLPSPRSIQELYKEKEQNLRVFSIKELKDATNGFNRLLKIGEGGFGSVYKGSVFAATTDSS DAGGEGERLVVAIKKLNKHGLQGHKQWVAEVQFLGIVNHPNLVKLLGYCSVDDERGIQRLLVYEYMPNKSLEDHLFNRGLPVLSWRKRLEIMLGAAQGLA YLHCGLEVPVIYRDFKCSNILLDVGFNPKLSDFGLAREGPTGDHTHVSTGVVGTHGYAAPEYIETGHLTIHSDLWSFGVVLYEILTGRRSLDLNRPTSEQ KLLNWVKQFPADSKKLCMIIDPRLRNGCSMTSARRVAKLADKCLNKNAKDRPSMGEVVEVLKLAIQDTEEPANGTTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47070			Protein kinase superfamily pro...		Lus10040135 [exp]	0	1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026944 [exp]	4.6	0.7977
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026946 [exp]	6.8	0.8233
AT4G16563			Eukaryotic aspartyl protease f...		Lus10028941 [exp]	8.8	0.7628
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	11.8	0.8035
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10022434 [exp]	13.7	0.7828
AT3G06880			Transducin/WD40 repeat-like su...		Lus10023666 [exp]	18.4	0.7496
AT5G21280			hydroxyproline-rich glycoprote...		Lus10009801 [exp]	19.6	0.7489
AT2G06530		VPS2.1	SNF7 family protein (.1)		Lus10021561 [exp]	20.4	0.7781
AT3G09830			Protein kinase superfamily pro...		Lus10038711 [exp]	24.7	0.7499
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008212 [exp]	27.1	0.7508

Compare expression of checked genes

Lus10040135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.