Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05490 405 / 2e-122 CHR31 chromatin remodeling 31 (.1) AT3G24340 377 / 5e-114 CHR40 chromatin remodeling 40 (.1) AT5G20420 249 / 1e-68 CHR42 chromatin remodeling 42 (.1) AT3G42670 237 / 2e-64 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT2G16390 188 / 4e-49 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 169 / 4e-43 CHR34 chromatin remodeling 34 (.1) AT1G08600 86 / 8e-17 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT3G32330 70 / 1e-12 DNA repair protein-related (.1) AT3G19210 64 / 6e-10 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT4G31900 55 / 2e-07 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003003 [exp] 699 / 0 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10011033 [exp] 696 / 0 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10001090 [exp] 494 / 2e-169 AT1G05490 202 / 6e-59 chromatin remodeling 31 (.1) Lus10040956 [exp] 261 / 4e-72 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 231 / 1e-62 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10041963 [exp] 199 / 1e-52 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10042070 [exp] 192 / 6e-50 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 183 / 3e-47 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10001089 [exp] 117 / 1e-29 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050200 [exp] 537 / 2e-173 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.008G073500 [exp] 256 / 1e-70 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.009G120700 [exp] 200 / 4e-53 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183832 [exp] 186 / 4e-51 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.004G159000 [exp] 132 / 4e-31 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.013G048500 [exp] 89 / 8e-18 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.019G021500 [exp] 84 / 3e-16 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.004G159100 [exp] 70 / 2e-13 AT2G16390 210 / 1e-63 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.004G141500 [exp] 65 / 2e-10 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2) Potri.003G110100 [exp] 65 / 3e-10 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040136 pacid=23173848 polypeptide=Lus10040136 locus=Lus10040136.g ID=Lus10040136.BGIv1.0 annot-version=v1.0 ATGCGGCAGGGGCTTCGGAGCCAAGAAGACGATCTCATCAGGCAGCGCTACGAGGAGTTCAAGAGTAAGCAGAAGAGACGAGGAAAACAAGAAGAAGAAG GATCAGGATCAGGAGCTGCCCCTGCCTCCCCCATCCTTGGGCAGAGTTCCGGACAAAGATCGTCTGCACTAGATAATAGTTACAGTGGCGGTTCCCAAAA CGTCGAATGTGGCGGCAGCAGCGTTAACCTCGTCGCGAAGGATAATGTAGGATCGGAGGAAGTTGAAGATAGAACTACAAGCTCTGACGACGACGTCTTT TGCTTGTGGAGCAATAAGATCTCCCGTGGTGGAGGAATCACGGAAGATGTTGGAACTAGGGGAAGCAAAACCGCGGGACATGACGATTCCGGTGAAAAGA ACCACGAATCTGATATCGTACAGGACGACAAACCTTCGGAGGCTTCGCCGGGGGAGGATAAGGAGGCGATGCCGAGTTCTAGTGAGACCAGCAATGATGA CGCCAGCGATCGTGATTACGAGGAGGATTTGCCATTTGATGCGTCCGAAGAGCTAAAATTGGGATCCGGTTCTGATTCTGTTAGGCTAAAAAAAGAACTA AGCAGCTGTAGAGCTGAGCAAGACAAGTCTGGCTTCTCTGAGATTGCAATTGAGGAGGCGAGTTCCAGCGAAGAAGAAGTTGAAATGGAAGCTGAAACTG GTAGGACAGCAGGAAAAGGATTGAGCCATGGAGCGGGTTGGTTGTGGGAGGAAGTTCCAAAAGCTGAAGACTGGGTTGAAATTGGAGCTTCGGATAACCC ATTTTTGGTAGATGAGCAAGAAGAAAATGATACAGGGTCACGTCGGACTGATCAGGCTAACGGAAGGAATCAACAATGCATGTGGAAATCCACTAGAAAG CCCAGAAGAGGATTTAAGGAGAGTGAAGTTGTCAACATTCTCGCTGATTCCATGTTAAAAGATGCAGAGCTACCTGCTGATCAAGGCGATCAGGAAGAGG AACCACAAGCTCAGGAGCAGAAGCAGAAGCTATGTGTAGGCAAGTTCAAATGTGATGAGCCCACTAGTCCAGAGAAATCAGAATATGAGAAGGAGCTTGA CCCTCTTTGGGATGAAATGGCCTTAGCCCTATATGGAACTGAGGATATTTCCATTACACCAAAGGAGGTTGATGAACTAGATCCTGCTACACTTTGTCGC CATCAGTTCATACTCGATGAAGAAATTGGTCTCTTGTGTAGATTCTGCTCTTTTGTGCAGGTGGAGATGAAATATTACTTGCCACCCTTTGCTGAAAAGT ATTATCGAACTGTGAACAGGGAAAGCTCTAACCACGGGGGAAAAGACATATCAGATGGACTTGCAGACTGTGATACCGATTCTCAAATGGTTTGTGATCA GAACGTTGTTGACAAAGGTACTGTCTGGGACATTATTCCTAAGATTCAGGAGGGGTTGCAAGTGCATCAGCGTGATGGTTTTGAGTTCTTATGGAGAAAT ATAGGCGGAGATATACGCATCGACAAGTTGAAAGAGCCAACCAGTTCAAGTGGATGTGTCATATCACATGCTCCAGGGACAGGGAAGACCCGTCTAGCCA TAAGATTCGTGCAGACCTACATGAAGCTTTTTCCTCACTGCAGACCAGTCATAATCGTCCCTTGCAGTATGCTACTATCTTGGGAAGCCGAGTTTGAGGC CTTGGGAGTCGACATTCCTCGTCACTATCTGAATGATCCAAAGCTATCTGGCAAAGAGAGTGTCGCAGCTACAAAGTTGTTGGACGATCACAGGAGTGTA CAAGCTGTCAGGTGGGTGAAGCTATATTCCTGGCAAAAGGAGTCTGGTATTTTGATATTAAGCTACAAGCTTTTTGAAGAACTTGTTGGCAAAGGGATGA GAAAGAAGAGGAAAACCGAAATTAGAAAACAAAAGGGAAGGTCTGTAGATGAAAGAATAAAGGAAGTCCTGCTTGGTGTTCCTGGCTTGTTGGTACTTGA TGAAGGCCATACAGCTCGTAATAACAGTAGCCTCATCTGGAGAGCTTTGTCCAAAGTCATAACAGAGAAGCGGATTGTTCTTTCGGGGACTCCATTTCAA AACAATTTTGTAGAGTTCTTCAATACTCTCTGGATGGCAAGACCTAACTTTGTAGACAACATATCATCCAGCACATTTGAAACATCTCATAGAAAACGTG GTCGCAGGGCGGTGAATGAAGCCAGGGAGAAATGGCAGTCATTGACGAGTTATCTCGGCAAAGATACTGATGATTGGCTAAAAGTCAAGAAACTGCAAGA GCTTAGAGATGGGATCAGCCCCTTTGTGCATGTCTACAAGGGCAATATACTCCAAGAAAAGCTCCCAGGTTTAAGAGACTCTGTGGTTATCTTACAGCCA GCCCATTTCCAGGAAGAGCTACTAGCTAATGTGCACGGAATTGCTCGGACACTCGAGCTTGATCAAGAGAAAGAGCCACTGAAATATTTGCACTGGGAAC ATGCACTCTCATTAGCTTTGGTGCACCCGTACCTGCTGTCAAAATGCAAAGGATCATTCCAGTCAGCAGATTTTGCAGATCTGGATATGCTGAGAGGGCT TGAATTGGATCCTGAGGCTGGAATCAAGACCAAGTTCCTTATTGAACTTATCAGAATCAGTGGGATACTGAATGAGAAGGTCTTGGTCTTTAGCCAGTAC CTTGATCCGTTGAGAATGATCGCAAAACAGCTAGAGGTTCGGTTCAAATGGATAGGAGACGTAGATTATCTGTCAATGCACGGAGGACTTGGTGTTCGTC AGCGGATGTCGTTGATAAAAAAACTTCAACGATCCCACTAG
AA sequence Show only first row Show all	>Lus10040136 pacid=23173848 polypeptide=Lus10040136 locus=Lus10040136.g ID=Lus10040136.BGIv1.0 annot-version=v1.0 MRQGLRSQEDDLIRQRYEEFKSKQKRRGKQEEEGSGSGAAPASPILGQSSGQRSSALDNSYSGGSQNVECGGSSVNLVAKDNVGSEEVEDRTTSSDDDVF CLWSNKISRGGGITEDVGTRGSKTAGHDDSGEKNHESDIVQDDKPSEASPGEDKEAMPSSSETSNDDASDRDYEEDLPFDASEELKLGSGSDSVRLKKEL SSCRAEQDKSGFSEIAIEEASSSEEEVEMEAETGRTAGKGLSHGAGWLWEEVPKAEDWVEIGASDNPFLVDEQEENDTGSRRTDQANGRNQQCMWKSTRK PRRGFKESEVVNILADSMLKDAELPADQGDQEEEPQAQEQKQKLCVGKFKCDEPTSPEKSEYEKELDPLWDEMALALYGTEDISITPKEVDELDPATLCR HQFILDEEIGLLCRFCSFVQVEMKYYLPPFAEKYYRTVNRESSNHGGKDISDGLADCDTDSQMVCDQNVVDKGTVWDIIPKIQEGLQVHQRDGFEFLWRN IGGDIRIDKLKEPTSSSGCVISHAPGTGKTRLAIRFVQTYMKLFPHCRPVIIVPCSMLLSWEAEFEALGVDIPRHYLNDPKLSGKESVAATKLLDDHRSV QAVRWVKLYSWQKESGILILSYKLFEELVGKGMRKKRKTEIRKQKGRSVDERIKEVLLGVPGLLVLDEGHTARNNSSLIWRALSKVITEKRIVLSGTPFQ NNFVEFFNTLWMARPNFVDNISSSTFETSHRKRGRRAVNEAREKWQSLTSYLGKDTDDWLKVKKLQELRDGISPFVHVYKGNILQEKLPGLRDSVVILQP AHFQEELLANVHGIARTLELDQEKEPLKYLHWEHALSLALVHPYLLSKCKGSFQSADFADLDMLRGLELDPEAGIKTKFLIELIRISGILNEKVLVFSQY LDPLRMIAKQLEVRFKWIGDVDYLSMHGGLGVRQRMSLIKKLQRSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040136 [exp]	0	1
AT3G59030		ATTT12, TT12	TRANSPARENT TESTA 12, A. THALI...		Lus10033596 [exp]	1.4	0.9582
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	3.0	0.9603
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10018101 [exp]	8.5	0.8561
AT3G54200			Late embryogenesis abundant (L...		Lus10007649 [exp]	8.7	0.9409
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036927 [exp]	13.9	0.9290
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	14.0	0.9340
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007352 [exp]	14.0	0.9294
AT1G02335		GL22	germin-like protein subfamily ...		Lus10023350 [exp]	15.0	0.9276
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10038480 [exp]	16.7	0.8968
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	17.2	0.9275

Compare expression of checked genes

Lus10040136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.