Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05490 90 / 4e-22 CHR31 chromatin remodeling 31 (.1) AT3G24340 83 / 1e-19 CHR40 chromatin remodeling 40 (.1) AT5G20420 67 / 6e-14 CHR42 chromatin remodeling 42 (.1) AT3G42670 66 / 1e-13 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT5G63950 53 / 3e-09 CHR24 chromatin remodeling 24 (.1) AT3G57300 50 / 4e-08 ATINO80 INO80 ortholog (.1.2) AT3G19210 49 / 8e-08 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT2G21450 49 / 1e-07 CHR34 chromatin remodeling 34 (.1) AT3G12810 49 / 1e-07 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G16390 49 / 1e-07 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001091 [exp] 221 / 2e-76 AT1G05490 87 / 4e-21 chromatin remodeling 31 (.1) Lus10011033 [exp] 131 / 1e-36 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10003003 [exp] 131 / 2e-36 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10009840 [exp] 68 / 2e-14 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10040956 [exp] 67 / 6e-14 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10031050 [exp] 54 / 3e-09 AT3G57300 2115 / 0.0 INO80 ortholog (.1.2) Lus10035436 [exp] 54 / 4e-09 AT3G57300 1875 / 0.0 INO80 ortholog (.1.2) Lus10037696 [exp] 50 / 8e-08 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10015690 [exp] 49 / 1e-07 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G050200 [exp] 114 / 2e-30 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.008G073500 [exp] 64 / 5e-13 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.016G043500 [exp] 52 / 6e-09 AT3G57300 2157 / 0.0 INO80 ortholog (.1.2) Potri.003G022100 [exp] 52 / 1e-08 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.006G047100 [exp] 51 / 2e-08 AT3G57300 2135 / 0.0 INO80 ortholog (.1.2) Potri.001G207700 [exp] 51 / 2e-08 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.007G102800 [exp] 50 / 3e-08 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.013G048500 [exp] 50 / 5e-08 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.004G159000 [exp] 50 / 7e-08 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.005G226500 [exp] 49 / 8e-08 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040137 pacid=23173964 polypeptide=Lus10040137 locus=Lus10040137.g ID=Lus10040137.BGIv1.0 annot-version=v1.0 ATGTTCCGAAGGAATCAGTTTGATTGGTGCATGGTCGTGTTGCTTGAAGTCGTGTGGAACCCGTCAGTGGCGAAACAAGCCATAAGTAGGGCTTACAGGC TTGGCCAGACCAAAGTAGTTCATGTATACAATCTCATCACTTCCATTGAAGAGGATAAGTTCCGGCGCCAGGTCGAAAAGGACCAAATGTCAGAGTTGGT CCTTCATTCTGCTAAAGTAGCCGATGGCTGCAAAAGGATTTCATTACAAGTCTCTCAGGATCCAGAGGATAGAGTTCTGGAAAAGATGTTTGAATGTGAG AAACTTAAAGTAATGTTCAAGAAGGTAATTAGTCAGCCTAAAGATTCTAAGGTCGTCTGA
AA sequence Show only first row Show all	>Lus10040137 pacid=23173964 polypeptide=Lus10040137 locus=Lus10040137.g ID=Lus10040137.BGIv1.0 annot-version=v1.0 MFRRNQFDWCMVVLLEVVWNPSVAKQAISRAYRLGQTKVVHVYNLITSIEEDKFRRQVEKDQMSELVLHSAKVADGCKRISLQVSQDPEDRVLEKMFECE KLKVMFKKVISQPKDSKVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05490		CHR31	chromatin remodeling 31 (.1)		Lus10040137 [exp]	0	1
AT2G23950			Leucine-rich repeat protein ki...		Lus10015484 [exp]	2.6	0.8871
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10016110 [exp]	7.1	0.8842
					Lus10033006 [exp]	7.9	0.8305
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	12.5	0.8754
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	13.4	0.8645
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Lus10021452 [exp]	14.4	0.8647
AT4G00820		IQD17	IQ-domain 17 (.1)		Lus10023233 [exp]	17.0	0.8615
AT3G22810			Plant protein of unknown funct...		Lus10009509 [exp]	17.5	0.8251
AT1G10380			Putative membrane lipoprotein ...		Lus10036906 [exp]	19.8	0.7894
AT3G48970			Heavy metal transport/detoxifi...		Lus10027470 [exp]	21.9	0.8218

Compare expression of checked genes

Lus10040137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.