Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27430 276 / 1e-96 Signal peptidase subunit (.1) AT3G05230 262 / 5e-91 Signal peptidase subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001092 [exp] 298 / 6e-105 AT5G27430 303 / 3e-107 Signal peptidase subunit (.1) Lus10004463 [exp] 231 / 1e-77 AT5G27430 254 / 5e-87 Signal peptidase subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G058000 [exp] 271 / 1e-94 AT5G27430 252 / 6e-87 Signal peptidase subunit (.1) Potri.005G036200 [exp] 271 / 2e-94 AT5G27430 252 / 5e-87 Signal peptidase subunit (.1) Potri.006G234600 [exp] 268 / 3e-93 AT5G27430 266 / 2e-92 Signal peptidase subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04573 [flax] [poplar] SPC22 Signal peptidase subunit
Representative CDS sequence Show only first row Show all	>Lus10040138 pacid=23173962 polypeptide=Lus10040138 locus=Lus10040138.g ID=Lus10040138.BGIv1.0 annot-version=v1.0 ATGCATTCCTTTATATACAGGGCCAATGCCTTGTTCACCTTTGCGATCACCATCCTTGGACTCATATGCGCCATGGCTTCCTTCTCTGACAACTTCAATT CTCCTTCCCCTTCTGCTCAAATCCAGATATTGAACATCAATTGGTTTCAGAAACAGCCTCAAGGAAATGACGAGGTAAGTCTCACGATGAATATAACAGC CGATCTGCAATCGCTCTTCACATGGAATACAAAGCAGGTTTTTGTATTCGTAGCTGCAGAATATGAGACTCCGAAGAATGCGCTAAACCAGATATCACTT TGGGATGCAATTATCCCATTGAAAGAGCATGCAAAGTTTTGGGTTCAAACACCAAACAAGTACCGATTTGTTGATCAGGGAAACAATCTCCGGGGGAAGA ACTTCAACTTGACATTGCATTGGCATATCATGCCCAAGAGTGGCAAGATGTTTGCTGACAAGTTAGTTATGCCAGGATACAGGCTGCCAGAAGAGTATAG ATAA
AA sequence Show only first row Show all	>Lus10040138 pacid=23173962 polypeptide=Lus10040138 locus=Lus10040138.g ID=Lus10040138.BGIv1.0 annot-version=v1.0 MHSFIYRANALFTFAITILGLICAMASFSDNFNSPSPSAQIQILNINWFQKQPQGNDEVSLTMNITADLQSLFTWNTKQVFVFVAAEYETPKNALNQISL WDAIIPLKEHAKFWVQTPNKYRFVDQGNNLRGKNFNLTLHWHIMPKSGKMFADKLVMPGYRLPEEYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27430			Signal peptidase subunit (.1)		Lus10040138 [exp]	0	1
AT3G55005		TON1B	tonneau 1b (TON1b) (.1)		Lus10030297 [exp]	2.0	0.8660
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10017135 [exp]	2.6	0.8843
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	4.0	0.8524
AT3G02220			unknown protein		Lus10043249 [exp]	5.2	0.8561
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10039887 [exp]	9.2	0.8506
AT1G01910			P-loop containing nucleoside t...		Lus10036552 [exp]	9.2	0.8226
AT3G02220			unknown protein		Lus10019392 [exp]	11.4	0.8243
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	11.8	0.8420
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10010928 [exp]	13.5	0.8491
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	13.7	0.8456

Compare expression of checked genes

Lus10040138 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.