Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44730 111 / 2e-27 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT4G17060 74 / 1e-14 FIP2 FRIGIDA interacting protein 2 (.1) AT3G24860 74 / 2e-14 Trihelix Homeodomain-like superfamily protein (.1) AT3G54390 58 / 3e-09 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G58630 56 / 2e-08 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G14180 56 / 2e-08 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G10030 54 / 8e-08 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000963 [exp] 578 / 0 AT2G44730 124 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10011020 [exp] 284 / 3e-93 AT2G44730 123 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10001004 [exp] 169 / 5e-50 AT4G17060 80 / 4e-17 FRIGIDA interacting protein 2 (.1) Lus10022789 [exp] 77 / 1e-15 AT3G24860 141 / 7e-40 Homeodomain-like superfamily protein (.1) Lus10011851 [exp] 74 / 1e-14 AT3G24860 140 / 1e-39 Homeodomain-like superfamily protein (.1) Lus10015282 [exp] 67 / 4e-13 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 68 / 9e-13 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 67 / 2e-12 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 64 / 4e-11 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083800 [exp] 231 / 1e-71 AT2G44730 123 / 6e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G150600 [exp] 174 / 9e-50 AT2G44730 114 / 6e-28 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 108 / 3e-26 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G139500 [exp] 107 / 4e-26 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.002G243300 [exp] 80 / 9e-17 AT3G24860 167 / 8e-50 Homeodomain-like superfamily protein (.1) Potri.001G113600 [exp] 69 / 6e-13 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 66 / 6e-12 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.003G195300 [exp] 57 / 8e-09 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.001G028400 [exp] 56 / 2e-08 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.008G027000 [exp] 47 / 1e-05 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040141 pacid=23173952 polypeptide=Lus10040141 locus=Lus10040141.g ID=Lus10040141.BGIv1.0 annot-version=v1.0 ATGTCCTCCGCCGTAGCCGCAGACTCCAGTTCTCGAAAAGTCCCTCCCCCTTGCTGGACGAGGGAGGAGACCGTCGAGCTAATCAAAGCCTACCGCGACA AATGGTTCGCCGTCAACCGTGGCAATCTCCGCGCCGCCGACTGGGACTCCGTCGCAGCCGTCCTGGCGGACTCACCAGCCCCTTCCGATCCGCCTAAGTC CGCCGTGCAGTGCCGTCACAAGATCGAGAAGATACGGAAGCGGTACCGTGCCGAGAAGCAGCGCTGCGTGAATTTCCCAGGTCGGTTCTTCTCCTCTTGG GATCTGTTCCCCTTGTTGGATTCCATGGAGATCGGATCGATCGGATCCAAACAGGAGAAGGATGTCGATAAGTCGAATAATAATAATAATAACGATCATT ACGAGGGCTTGGAGGAGCCTGATTTGGATCTCGATCCGGATTTGGTTTTTAGGGCGAGGAAGTTTGGTAAAGTATCTGGTGGATTTAACGAGCGTGTTGT TGATTATGGGAACAAATATGATCAGAATTCAGTGTCTGTAGCGTTTATGCCCAATGACTATGGAAGATTCGATAGGAAAATTGGGGGTAACAACAGTAAC CTAGGGTTTGATAGTGACTATGGAAGTGGTGGATTCTCTAGGAAGATGGGGCAATTGCAGAGAGATGATATGATGAACGGTGTTAATGAAGAAAGAGACC GGTTTGGGAAGAAAGTGGTCGAGGAATGGGGGTATGGCTCATCGAGGATTCGAGTGAAGAACCACATCCAAGCTGATCGAAATGGGTTTGGGAGTGGTAA CACGAATGGTGTTGATGGTGGAGGAGTTAGTAGCAAGGGTAAAGATCCAGTTGCAGAAGTTGTGTCGGCGATTAAGATGCTGAGGGAAGGGTTTGTGATG GTGGAAGAGATGAAGATGGACATGGCAATGGAAATTGAGAAGATGAGAATGGGGATGGAGTTGAAGCATAACCAGATGCTGATCGAGATGCAGCAGGACA TTGTTGATGCATTTGCAAAGGCTCATGTGAAGAAGAAGACGAACAATATAAATAAGAAGAAGAGGAAGATGGATGTATCCTCATCCCCTAATTTGCACAG AAACAACGGGGAGTCTGAAATTGCAGCAACAGAGTTTGAAACCATTGACTGA
AA sequence Show only first row Show all	>Lus10040141 pacid=23173952 polypeptide=Lus10040141 locus=Lus10040141.g ID=Lus10040141.BGIv1.0 annot-version=v1.0 MSSAVAADSSSRKVPPPCWTREETVELIKAYRDKWFAVNRGNLRAADWDSVAAVLADSPAPSDPPKSAVQCRHKIEKIRKRYRAEKQRCVNFPGRFFSSW DLFPLLDSMEIGSIGSKQEKDVDKSNNNNNNDHYEGLEEPDLDLDPDLVFRARKFGKVSGGFNERVVDYGNKYDQNSVSVAFMPNDYGRFDRKIGGNNSN LGFDSDYGSGGFSRKMGQLQRDDMMNGVNEERDRFGKKVVEEWGYGSSRIRVKNHIQADRNGFGSGNTNGVDGGGVSSKGKDPVAEVVSAIKMLREGFVM VEEMKMDMAMEIEKMRMGMELKHNQMLIEMQQDIVDAFAKAHVKKKTNNINKKKRKMDVSSSPNLHRNNGESEIAATEFETID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10040141 [exp]	0	1
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Lus10034253 [exp]	3.7	0.8035
AT5G43490			unknown protein		Lus10003153 [exp]	4.9	0.7991
AT1G15230			unknown protein		Lus10035871 [exp]	6.3	0.7783
					Lus10031351 [exp]	11.5	0.7794
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	13.2	0.7627
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10012089 [exp]	15.5	0.7509
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	23.2	0.7829
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10040613 [exp]	23.7	0.6862
AT5G41020	MYB		myb family transcription facto...		Lus10024036 [exp]	24.0	0.7637
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10025845 [exp]	24.7	0.7135

Compare expression of checked genes

Lus10040141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.