Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17050 422 / 7e-149 UGLYAH ureidoglycine aminohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000805 [exp] 42 / 6e-05 AT1G27220 40 / 7e-05 paired amphipathic helix repeat-containing protein (.1) Lus10034068 [exp] 42 / 0.0007 AT1G47480 192 / 9e-58 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083600 [exp] 441 / 3e-156 AT4G17050 469 / 2e-168 ureidoglycine aminohydrolase (.1) Potri.001G150800 [exp] 251 / 1e-82 AT4G17050 259 / 5e-87 ureidoglycine aminohydrolase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040144 pacid=23174052 polypeptide=Lus10040144 locus=Lus10040144.g ID=Lus10040144.BGIv1.0 annot-version=v1.0 ATGTGTCGATCATTATTGAAATATGGAGGTCATTTTTCTTTTCAGTTTGTTCGGAGAGATCGAAATTTTATTACTCATGTGTTAGCTCGACAATCTATTT TCCTTGTAGCCCTGCCTGTAGGATCTGCACCTCCGACGTGGCTCAATCATCTAGAAGTTAAAGTGGCTGCCGTCGATCCCCTCCACTACTACTTCATCAA TCATCAGTGGGCTGTGGCTGCTCAGAACCGAGAATTGGCGATGATGCCTCACTTGTTAATTTCCCGGTCGCAGATCGTTATCCTTCTCACCTTCCTCTCA ATAAGAACTGTTAATCTTGCTTTTGCGGCTGAAGGATTCTGCTCTGCTCCATCAATAGAGGAGAATGGAGTGGATTCCCAACATCTCTATTGGAAAGTCA CGAACCCCACATTGTCACCTGATCATTTGCAGGATTTGCCAGGTTTCACGCGCAGTGTTTACAAAGCTGACCATGCTTTGATCACTCCTGAAAGTCATGT GTTCAGCCCTTTACCGAAGTGGACAAATACACTGGGCGCTTATTTAGTCACCCCAGCTTTGGGCTCACACTTTGTGATGTATCTTGCTAAAATGAAAGAA AATTCAAGGGCAGGGAAACCGTCTAATGGTGTGGAGAGGTTTATATTTGTGGTTCAGGGCTCTGCCTCTCTCATTAATGCATCAGGTGCCACTCACAATC TGATGGTGGACTCATATGCCTACTTCCCTGCATTGTCCGATTATGATCTAGAGTGCAGGATTTCTGCTACTCTAATCGTCTTCGAGAAAAGGTATGTCCC TATAGCTAGTCACCTGCCCGAGCAGATTGTTGGTTCTACAGATAAACAGCCACTTCTTGAAACTCCAGGCGAGGTTTTTGAACTTAGGAAGCTTCTTCCA CAGTCATTGCAATACGACTTTAACATCCACGAAGTTCATTACAATCAGCATGGTCTACTGCTATTGGAGGGACAAGGCATTTATCGTCTGGGTGACAGCT GGTATCCTGTCCAAGCTGGTGACGCAATTTGGATGGCCCCATTTGTGCCTCAGTGGTATGCTGCGCTTGGTAAAACCCGATCAAGATATTTGCTGTACAA AGATGTCAATAGAGATCCACTGTAG
AA sequence Show only first row Show all	>Lus10040144 pacid=23174052 polypeptide=Lus10040144 locus=Lus10040144.g ID=Lus10040144.BGIv1.0 annot-version=v1.0 MCRSLLKYGGHFSFQFVRRDRNFITHVLARQSIFLVALPVGSAPPTWLNHLEVKVAAVDPLHYYFINHQWAVAAQNRELAMMPHLLISRSQIVILLTFLS IRTVNLAFAAEGFCSAPSIEENGVDSQHLYWKVTNPTLSPDHLQDLPGFTRSVYKADHALITPESHVFSPLPKWTNTLGAYLVTPALGSHFVMYLAKMKE NSRAGKPSNGVERFIFVVQGSASLINASGATHNLMVDSYAYFPALSDYDLECRISATLIVFEKRYVPIASHLPEQIVGSTDKQPLLETPGEVFELRKLLP QSLQYDFNIHEVHYNQHGLLLLEGQGIYRLGDSWYPVQAGDAIWMAPFVPQWYAALGKTRSRYLLYKDVNRDPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17050		UGLYAH	ureidoglycine aminohydrolase (...		Lus10040144 [exp]	0	1
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034749 [exp]	1.7	0.7431
AT5G52280			Myosin heavy chain-related pro...		Lus10016240 [exp]	2.0	0.7184
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10003915 [exp]	5.0	0.6894
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10007216 [exp]	6.9	0.6774
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	7.7	0.6525
AT4G35140			Transducin/WD40 repeat-like su...		Lus10025088 [exp]	14.5	0.6818
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	18.0	0.6479
AT1G14570			UBX domain-containing protein ...		Lus10039137 [exp]	22.7	0.6991
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	23.8	0.6695
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10031466 [exp]	27.5	0.6523

Compare expression of checked genes

Lus10040144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.