Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000961 [exp] 335 / 4e-119 ND 39 / 5e-04 Lus10011019 [exp] 137 / 2e-37 AT4G17610 1595 / 0.0 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10007598 [exp] 118 / 3e-33 ND 42 / 2e-04 Lus10027768 [exp] 107 / 2e-29 ND / Lus10035527 [exp] 107 / 3e-29 AT4G24640 40 / 4e-04 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10000822 [exp] 46 / 4e-06 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 43 / 3e-05 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 42 / 5e-05 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002738 [exp] 40 / 0.0002 AT1G47960 67 / 5e-14 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012800 [exp] 87 / 8e-22 ND / Potri.005G195200 [exp] 84 / 2e-20 AT5G64620 42 / 7e-05 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.005G022200 [exp] 82 / 6e-20 ND / Potri.013G012733 [exp] 82 / 7e-20 ND / Potri.005G022250 [exp] 74 / 1e-16 ND / Potri.013G012766 [exp] 74 / 1e-16 ND / Potri.005G022300 [exp] 74 / 2e-16 ND / Potri.005G022400 [exp] 73 / 4e-16 ND / Potri.001G073350 [exp] 59 / 6e-11 ND / Potri.002G191500 [exp] 51 / 4e-08 AT2G31430 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10040145 pacid=23173939 polypeptide=Lus10040145 locus=Lus10040145.g ID=Lus10040145.BGIv1.0 annot-version=v1.0 ATGGCTCCCAAGATCGTGCATCTTCTTCCCTTGGCAGCCCTAATCTTAATCCTCTGCCTCCCATCCCAAACCGAATCACACTCGCCGTCGTCCATCTCCG ACTTCCACAAATCCGTCTGCCAGAAGAGCAACGACTACGCAGGGTGCATGAGGACCCTGAGATTGGACCCCAGGCTGGCCGCCGCCGGCGACATTAACAC CCTGGCGAAGGTGGCGATGGACAAGGCGCAGAGGAAGTCGATGACGCTGAGCGACAGGTTTGCGAAGATGGAGAACGAGAACCCCGATCCGAAGGTGAAG GAAGCGCTGAAGATGTGCGCGTTCGATTTCAAGGACGCGAAGATCTTCTTCAACCCTAGGTTGCTTGGGGATCCGACGGGGAGCTTGGATATTCATTCGG CGTTGGACAATTGGCAGAACTGCAAGACTTTGATGGAGCAGAATCCGGATCTGCAGAAGATGGCTCCTGCGCTGAGGAAGTGGAAGCACCTGTATGCGAT TGCGAATGGGGCGGTTGTTTACGCCGAAGATGAATCTGGCGGTGGTGGCGGTGGGGATTACCCTTAA
AA sequence Show only first row Show all	>Lus10040145 pacid=23173939 polypeptide=Lus10040145 locus=Lus10040145.g ID=Lus10040145.BGIv1.0 annot-version=v1.0 MAPKIVHLLPLAALILILCLPSQTESHSPSSISDFHKSVCQKSNDYAGCMRTLRLDPRLAAAGDINTLAKVAMDKAQRKSMTLSDRFAKMENENPDPKVK EALKMCAFDFKDAKIFFNPRLLGDPTGSLDIHSALDNWQNCKTLMEQNPDLQKMAPALRKWKHLYAIANGAVVYAEDESGGGGGGDYP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040145 [exp]	0	1
AT5G43260			chaperone protein dnaJ-related...		Lus10037022 [exp]	6.5	0.8498
AT1G61930			Protein of unknown function, D...		Lus10020047 [exp]	9.2	0.8592
AT1G61600			Protein of unknown function (D...		Lus10035372 [exp]	10.0	0.8384
AT5G16380			Protein of unknown function, D...		Lus10020218 [exp]	17.6	0.7386
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	17.9	0.8282
AT3G53810			Concanavalin A-like lectin pro...		Lus10016507 [exp]	18.2	0.8240
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	19.2	0.8380
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10040872 [exp]	21.4	0.8272
AT3G09032			unknown protein		Lus10027777 [exp]	22.5	0.8066
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10003157 [exp]	23.7	0.8436

Compare expression of checked genes

Lus10040145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.