Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30020 591 / 0 PA-domain containing subtilase family protein (.1) AT2G19170 589 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT1G62340 549 / 0 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT5G44530 532 / 1e-177 Subtilase family protein (.1) AT1G30600 532 / 1e-177 Subtilase family protein (.1) AT4G20430 528 / 7e-176 Subtilase family protein (.1.2) AT4G34980 300 / 1e-89 SLP2 subtilisin-like serine protease 2 (.1) AT3G14240 276 / 8e-81 Subtilase family protein (.1) AT2G05920 271 / 2e-79 Subtilase family protein (.1) AT4G10520 270 / 5e-79 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000960 [exp] 1529 / 0 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001006 [exp] 1158 / 0 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10011018 [exp] 825 / 0 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1) Lus10006973 [exp] 577 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10023389 [exp] 533 / 2e-177 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 531 / 4e-177 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10015559 [exp] 528 / 6e-176 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10001310 [exp] 498 / 7e-165 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10008060 [exp] 325 / 3e-98 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151100 [exp] 1162 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.006G076200 [exp] 598 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 593 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G440300 [exp] 541 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.011G155400 [exp] 539 / 6e-180 AT4G20430 1143 / 0.0 Subtilase family protein (.1.2) Potri.011G010700 [exp] 362 / 4e-116 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.014G026700 [exp] 300 / 6e-90 AT5G67090 582 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G133400 [exp] 299 / 3e-89 AT4G34980 1121 / 0.0 subtilisin-like serine protease 2 (.1) Potri.014G026600 [exp] 296 / 2e-88 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.007G045100 [exp] 296 / 3e-88 AT5G67090 727 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10040146 pacid=23174036 polypeptide=Lus10040146 locus=Lus10040146.g ID=Lus10040146.BGIv1.0 annot-version=v1.0 ATGGCTTCCATTCTCGCGATTCTTCTCGTCATATCTATGATCAACATTCTCAGCCTTGTTTCGGTTGAACCCAAAGTTTACATTATTCTGATGGAAGAGG AGCCTGTTTTCTCTGTCAAGTCCAATACTTCTCATTCCAGGATTCAGGAGGAGGAGGTCATGGCATACAAACAGAGGCTAATGATTAGCCATGACGTATT CTTGGAATCCATCCTCAAGCACAACAACTACACCAAGCTCTATAGCTATACTCATTTGCTTAATGGCTTTGCCGTCCATGTCGATTCCGACGAGGTGATC AGTGCTCTCAAGAGCGCAAAGGGAGTGAGAGCTGTTCATGAAGACATCAAAATGCAGAAGCTAACAACACATACGCCAGCCTTTCTAAGGATACCTACTG GCGTCTGGCCGGCTTTAGGGGGGCCTGAAAACTCCGGTGATGGGGTCGTTATAGGTTTGATTGACACCGGCATAAACCCTTTGCACCCCAGTTTCAGGAC AAACTTGTCCACGAGGTTCAACACCACCATCAACACCACCACTTCAAGATTCAAAGGCAAATGTGACACCGGAGTTCAGTTCCCTCCCACTTCCTGCAAT GGGAAGATCGTTGGTGCTCAGTATTTCGCCCGTGCAGCCATTGCAGCTGGCGATTTCAACGCTACCCGTGATTATGTATCTCCTTTCGACGCTGATGGCC ATGGAAGGCAAGTAACAGATGTCACTGCAAATCTATTCCATACAGCTTCCACAGCTGCTGGGAACCATCACATACCAGTTATAGCCAATGGCTTCAACTA TGGATATGCAAGTGGTATGGCTCCCGGGGCCAGGATCGCCGTGTACAAAGCTCTATATACATTTGGAGGTTACATGTCAGATGTTGTTGCAGCAGTTGAT CAGGCTGTAGAAGATGGAGTCGACATACTAAGCCTTTCGATAGGGCCATCAAGTGTCCCACCAGGTCCATCTGCTTTCCTTAATGTGCTAGAAATGGAGC TCTTGTTTGCTACAAAAGCCGGTATCTTTGTAGTTCAAGCAGCCGGCAATGGCGGCCCTTCTTCAAGTTCAATCCTTTCTTTCAGCCCATGGATCACAAC AGTTGCAGCATCCACCACAGATCGCAGATACAACAATACCATCATCTTAGGAAATGGTTTAAGCTTCTCCGGCACTGGCCTTGCCCCACCAACTTCAGGA ACAGCGTCGGTCCCTATAGCAGCAGCAGCAGATGTGTCTCAGAGGAACACTACAAGTGTTATGGATATAGAAAGTTGTCAACATCCAGAACATTTCATCC CATCACTGGCTCGTCAAAAGCTCATAATCTGTACGTATAACTTCGACTTTGAGTACGAAGCTGCAAGCATTGCGACCATAGCAGACACTATTCAGAAGGT AGGAGCAACAGGGTTCATAATCACAATGGACCCAGCTATTGGCTCTGAGCAAGTGAAAGGCACTACTATGACCATGAAAGTCCCTGCCATTATCCTCAAC AACATGCAAGCTTCCTCGGCTTTATGGGAGTACTATAACTCGAACACGAAAAGAGGGACGAACGGGGAAGCTACGGTGTTTTCTGCAGAGGCTAGGATAT TGGGTGGAAGACAAGCATTTTTCACTGGACAAGCGCCGGTCGTTGCATCCTATTCATCTAGAGGTCCTGATGTAAACAATGCACTGTTGCAGACTGCTGA TGTCCTGAAACCAAACATCATGGCTCCGGGTTCCTCCATTTGGGCTGCGTGGAGCCCGAACAGCGAAGGAGACCCTTACATAAAGGGACAAAACTTTGCG CTGGTATCAGGTACCAGCATGGCCACGCCACACATTGCTGGAGTTGCAGCCCTCATAAAGCACAAACACCCCAAATGGAGCCCAGCGGCAATCACCTCGG CGATGATGACAACTGCTGATAGAATCGACCGCCACTCTCACTCTCCAATCATGGCACAATTAACCAACCAGCTAGCTCCAGCTACACCCTTTGATCTTGG GTCGGGGTCTGTCAATCCTTCCAAGGCTATCGACCCAGGGCTCGTGTTCAATGCCCAGTTCAACCACTATGTCCAGTTTCTCTGTTCGGTTCCAGGTGTT GATGATGATTCTGTGAGGAGAGCACTAGGGAGCGGGTGTCCACCGCGAAGGAGAAAGGGTGCATCTCGGTGCTCGGATTTGAACACACCGAGCGTGACAA TCTCCAACCTTGTTGGGTCGAGGAAAGTGGTCAGGACCGTTACCAATGTGGGTGCAAAGGAAGAGTTTTACCGGGTCACGGTTAGGAAACCGGTTGGGGT TAACATCACCGTGACCCCTAGGTTCTTTATTGTAAGGGGCCACGCTTCGAGGCGTCTTAGTATTATGCTGCACGCCACCAACGCCACAAAGAGTTACACA TTCGGGGAGATGGTGATGCATGGGAGCAGGAAGCATGTGGTTAGGGTTCCTATTGCTGTTTATGTCAGTAGTTAG
AA sequence Show only first row Show all	>Lus10040146 pacid=23174036 polypeptide=Lus10040146 locus=Lus10040146.g ID=Lus10040146.BGIv1.0 annot-version=v1.0 MASILAILLVISMINILSLVSVEPKVYIILMEEEPVFSVKSNTSHSRIQEEEVMAYKQRLMISHDVFLESILKHNNYTKLYSYTHLLNGFAVHVDSDEVI SALKSAKGVRAVHEDIKMQKLTTHTPAFLRIPTGVWPALGGPENSGDGVVIGLIDTGINPLHPSFRTNLSTRFNTTINTTTSRFKGKCDTGVQFPPTSCN GKIVGAQYFARAAIAAGDFNATRDYVSPFDADGHGRQVTDVTANLFHTASTAAGNHHIPVIANGFNYGYASGMAPGARIAVYKALYTFGGYMSDVVAAVD QAVEDGVDILSLSIGPSSVPPGPSAFLNVLEMELLFATKAGIFVVQAAGNGGPSSSSILSFSPWITTVAASTTDRRYNNTIILGNGLSFSGTGLAPPTSG TASVPIAAAADVSQRNTTSVMDIESCQHPEHFIPSLARQKLIICTYNFDFEYEAASIATIADTIQKVGATGFIITMDPAIGSEQVKGTTMTMKVPAIILN NMQASSALWEYYNSNTKRGTNGEATVFSAEARILGGRQAFFTGQAPVVASYSSRGPDVNNALLQTADVLKPNIMAPGSSIWAAWSPNSEGDPYIKGQNFA LVSGTSMATPHIAGVAALIKHKHPKWSPAAITSAMMTTADRIDRHSHSPIMAQLTNQLAPATPFDLGSGSVNPSKAIDPGLVFNAQFNHYVQFLCSVPGV DDDSVRRALGSGCPPRRRKGASRCSDLNTPSVTISNLVGSRKVVRTVTNVGAKEEFYRVTVRKPVGVNITVTPRFFIVRGHASRRLSIMLHATNATKSYT FGEMVMHGSRKHVVRVPIAVYVSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10040146 [exp]	0	1
					Lus10039034 [exp]	4.2	0.8544
AT5G57790			unknown protein		Lus10023209 [exp]	6.9	0.6524
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10014228 [exp]	7.2	0.8474
					Lus10013260 [exp]	8.8	0.8442
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	10.2	0.8442
					Lus10005297 [exp]	11.4	0.8442
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	12.5	0.8442
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	13.5	0.8442
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	14.4	0.8442
					Lus10006529 [exp]	15.3	0.8442

Compare expression of checked genes

Lus10040146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.