Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17600 259 / 9e-87 LIL3:1 Chlorophyll A-B binding family protein (.1) AT5G47110 252 / 3e-84 LIL3:2 Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011016 [exp] 266 / 6e-90 AT4G17600 273 / 1e-92 Chlorophyll A-B binding family protein (.1) Lus10001008 [exp] 264 / 6e-89 AT4G17600 270 / 2e-91 Chlorophyll A-B binding family protein (.1) Lus10000959 [exp] 0 / 1 AT4G17600 141 / 3e-65 Chlorophyll A-B binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083500 [exp] 273 / 2e-92 AT4G17600 300 / 3e-103 Chlorophyll A-B binding family protein (.1) Potri.001G151300 [exp] 264 / 9e-89 AT4G17600 268 / 2e-90 Chlorophyll A-B binding family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040147 pacid=23174149 polypeptide=Lus10040147 locus=Lus10040147.g ID=Lus10040147.BGIv1.0 annot-version=v1.0 ATGTCTATTTCCACGACGCTCCTCTCTCCGCCTCCGCCGCCGGCATCCACTCGCCGCCTCTTTCAGTCTTCTTCTCGTGCCGCTCTCTTCCTCAAACCCA CGCCAAACGCATTCCTACGTCTCTCCGCCCCCAGAGCCTCCGCGGACAACGGTTCCGGAGTTTCCTCCGCTTCCGCCACCGTCGCCGTGGAGGAAGATCC GGAAAAACCGGCTACCACTGTCGAGCCAGAAGTGAAAGTTAGCTCCGAGGAAGGAAATGGAGCAGCTGTTGGGGAAGTAGAGACGAAGTCGGCCCCTGTT GGTGTTAGCAAGTTCGCCGATAGTAGATGGGTGGGAGGGACTTGGGACTTGAAGCAGTTCCGTAAGGATGGGACGACCACCACCGATTGGGATGCCCTCA TCGACGCTGAGGCTAGGAGGAGGAAATGGCTACAGGACAACCCTGAATCGACCAACAACGACGAACCTATTCTCTTCGACACCTCCATTATACCATGGTG GTTTTGGATCAAAAGATACCATCTCCCTGAAGCTGAACTACTCAATGGCCGAGCTGCAATGGTAGGGTTCTTTATGGCTTACTTTGTGGATAGCTTGACC GGTGTAGGCCTGGTCGACCAAATGGGCAACTTCTTCTGCAAAACACTCTTGTTCGGCGCTGTTGTTGGAGTGCTCGTGTTCCGAAAGAATGAGGATGTAG AAACTGTAAAGAAGTTGATTGAAGAGACAACCTTCTACGACAAGCAATGGCAGGCAGCTTGGAAGGATGAGAGCACCAGCAATTCTAAAAAGGACTAG
AA sequence Show only first row Show all	>Lus10040147 pacid=23174149 polypeptide=Lus10040147 locus=Lus10040147.g ID=Lus10040147.BGIv1.0 annot-version=v1.0 MSISTTLLSPPPPPASTRRLFQSSSRAALFLKPTPNAFLRLSAPRASADNGSGVSSASATVAVEEDPEKPATTVEPEVKVSSEEGNGAAVGEVETKSAPV GVSKFADSRWVGGTWDLKQFRKDGTTTTDWDALIDAEARRRKWLQDNPESTNNDEPILFDTSIIPWWFWIKRYHLPEAELLNGRAAMVGFFMAYFVDSLT GVGLVDQMGNFFCKTLLFGAVVGVLVFRKNEDVETVKKLIEETTFYDKQWQAAWKDESTSNSKKD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	0	1
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	1.4	0.9666
					Lus10040882 [exp]	1.7	0.9540
AT3G51510			unknown protein		Lus10033303 [exp]	2.8	0.9525
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	3.2	0.9604
AT3G15110			unknown protein		Lus10009195 [exp]	4.9	0.9360
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	5.2	0.9348
AT5G52960			unknown protein		Lus10039319 [exp]	5.3	0.9279
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024893 [exp]	5.8	0.9257
AT3G19810			Protein of unknown function (D...		Lus10010214 [exp]	6.0	0.9438
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	7.1	0.9506

Compare expression of checked genes

Lus10040147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.