Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 137 / 8e-41 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 100 / 3e-26 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45960 97 / 1e-25 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT3G45970 97 / 5e-25 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT2G20750 66 / 2e-13 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT1G65680 60 / 2e-11 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT5G05290 50 / 9e-08 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G40610 49 / 2e-07 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT1G65681 48 / 3e-07 EXPB6 beta expansin 6 (.1) AT1G12560 45 / 3e-06 ATHEXPALPHA1.26, ATEXP7, ATEXPA7 expansin A7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000958 [exp] 232 / 3e-78 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10011013 [exp] 178 / 5e-57 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10001009 [exp] 177 / 1e-56 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011012 [exp] 111 / 1e-30 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10001010 [exp] 110 / 2e-30 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10000957 [exp] 109 / 4e-30 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10040149 [exp] 106 / 6e-29 AT4G17030 221 / 2e-72 expansin-like B1 (.1) Lus10003336 [exp] 104 / 7e-28 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10022639 [exp] 103 / 2e-27 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083200 [exp] 163 / 6e-51 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 162 / 8e-51 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.009G141400 [exp] 109 / 6e-30 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.004G181700 [exp] 107 / 3e-29 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.003G087000 [exp] 86 / 5e-21 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 84 / 3e-20 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.013G134300 [exp] 60 / 3e-11 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.014G066300 [exp] 59 / 5e-11 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.019G101900 [exp] 59 / 7e-11 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.001G001100 [exp] 47 / 1e-06 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040148 pacid=23173799 polypeptide=Lus10040148 locus=Lus10040148.g ID=Lus10040148.BGIv1.0 annot-version=v1.0 ATGTTATGTATAATCATGCTTTCACTGATCAGCTTTGTGGCCGGCGGCGATGACTTCGTGTGCTCAAGAGCTACTTACTACGGCAGTCCTGATTGCTTAG GGACTCCACTAGAAGTCGAGTACCGTAGAATCCCATGCAAGTACGCATCCGGCTACAATATACAGTTCAATGTTAAAGAACACAGCAAGTTCCCTCACTA CTTGCCCATCGTCCTCCTCTACCAAGCTTCCCAATACGACGTCTTAGCTGTCGACATGTGGCAGGAGGATTGCAAGGAATGGAGAGGGATGAGGAGGGCA TACGGCGCCGTTTGGGACATTGTTACCCCGCCAAAGGGTCCGACTACATTGAGGTTCCAAGTGACGAGCGGTGTGGAAGTGAAATGGGTCGAGGCCAAAG GTGTTCTGCCTTGTGAATGGGAAGCTGGTGCCACTTATGATTCTAATCTTCAGCTTTAA
AA sequence Show only first row Show all	>Lus10040148 pacid=23173799 polypeptide=Lus10040148 locus=Lus10040148.g ID=Lus10040148.BGIv1.0 annot-version=v1.0 MLCIIMLSLISFVAGGDDFVCSRATYYGSPDCLGTPLEVEYRRIPCKYASGYNIQFNVKEHSKFPHYLPIVLLYQASQYDVLAVDMWQEDCKEWRGMRRA YGAVWDIVTPPKGPTTLRFQVTSGVEVKWVEAKGVLPCEWEAGATYDSNLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040148 [exp]	0	1
					Lus10016642 [exp]	8.8	0.6633
AT1G80245			Spc97 / Spc98 family of spindl...		Lus10040637 [exp]	11.0	0.6821
AT1G01920			SET domain-containing protein ...		Lus10016435 [exp]	17.0	0.6501
AT2G26730			Leucine-rich repeat protein ki...		Lus10001900 [exp]	28.2	0.6773
AT5G53500			Transducin/WD40 repeat-like su...		Lus10011313 [exp]	28.2	0.6137
AT3G47090			Leucine-rich repeat protein ki...		Lus10034078 [exp]	31.3	0.6757
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10000177 [exp]	32.0	0.5856
AT5G03555			permease, cytosine/purines, ur...		Lus10023889 [exp]	47.8	0.6554
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10042319 [exp]	64.2	0.6393
AT5G54980			Uncharacterised protein family...		Lus10021788 [exp]	79.5	0.6077

Compare expression of checked genes

Lus10040148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.