Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 207 / 5e-67 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT3G45960 139 / 9e-41 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT4G38400 124 / 1e-34 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45970 123 / 6e-34 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT1G65680 122 / 1e-33 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT4G28250 121 / 4e-33 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT2G20750 119 / 2e-32 ATHEXPBETA1.5, ATEXPB1 expansin B1 (.1) AT2G45110 115 / 3e-31 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT1G65681 102 / 3e-26 EXPB6 beta expansin 6 (.1) AT3G60570 85 / 1e-19 ATHEXPBETA1.3, ATEXPB5 expansin B5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000957 [exp] 468 / 1e-169 AT4G17030 226 / 2e-74 expansin-like B1 (.1) Lus10011012 [exp] 320 / 4e-111 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10001010 [exp] 314 / 6e-109 AT4G17030 223 / 6e-73 expansin-like B1 (.1) Lus10001009 [exp] 242 / 2e-80 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011013 [exp] 240 / 7e-80 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000958 [exp] 232 / 1e-76 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10030931 [exp] 169 / 1e-51 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10001244 [exp] 148 / 2e-43 AT4G17030 153 / 3e-45 expansin-like B1 (.1) Lus10003336 [exp] 147 / 3e-43 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083200 [exp] 247 / 1e-82 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 242 / 1e-80 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.003G087000 [exp] 162 / 5e-49 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 158 / 9e-48 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.004G181700 [exp] 155 / 1e-46 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.009G141400 [exp] 154 / 7e-46 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.013G134300 [exp] 129 / 2e-36 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.019G101900 [exp] 127 / 1e-35 AT4G28250 367 / 1e-129 expansin B3 (.1.2) Potri.014G066300 [exp] 126 / 5e-35 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.010G202500 [exp] 71 / 2e-14 AT2G39700 473 / 2e-171 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10040149 pacid=23173911 polypeptide=Lus10040149 locus=Lus10040149.g ID=Lus10040149.BGIv1.0 annot-version=v1.0 ATGAGCTGTGTTCTTGAGATCTGTCTCCTTGCTTTTACTTCCCTGCTAACGATTGGGTCATCCCAATTCCACCCATCAAAAGCTGTCTTCTACCGTAGCC CTGATTGCTTGGGCACTCCAAGTGGAGCCTGTGGTTATGGCATCCATGGAAGAACCATCAACAATGCTGTAGTGGGTGGCGTTTCTGGACTCTGGAACAA TGGAACTGGCTGCGGTGCTTGCTACCAGGTGAGGTGTAAAGCTGCAGATCTATGCAATCAGGAAGGGATTACAGTAGTAGTCACTGATAACGCTGCAGCA GACGATGCTCATTTCGTCCTAAGCGCACACGCTTACGGCAGCATGGCTTACCCGAGTAAGACCGCTGAGCTCTACTTATTAGGGGTTGTGGATGTGGATT ACCAACGTACACCATGCCGGTTCCCCGGTTACAACCTCATTTTCAAGGTGGTAGAGCATAGCAGGTTCCCTCACTACTTGGCCATAGTTCCTATGTTCTA CAATGGGGAACAAGATATACATGGTGTCGAATTACAGCCGGAGGGTGGAGATAAATGGATAAGTATGAACAAGGCGTGGGGTGCGGTTTGGGACTTGCCT GTTCCACCAACCGGTGCTCTTAAGCTTAGGGTCAAAGTACGCAATGTAAATGGAGAGGAGAAATTGATAGAAGCAAACAAGGCCTTACCGAGTTCATGGA AGCCTGGTGCTGGTTATGATTCCCGTGTCCAGCTTTCTTAA
AA sequence Show only first row Show all	>Lus10040149 pacid=23173911 polypeptide=Lus10040149 locus=Lus10040149.g ID=Lus10040149.BGIv1.0 annot-version=v1.0 MSCVLEICLLAFTSLLTIGSSQFHPSKAVFYRSPDCLGTPSGACGYGIHGRTINNAVVGGVSGLWNNGTGCGACYQVRCKAADLCNQEGITVVVTDNAAA DDAHFVLSAHAYGSMAYPSKTAELYLLGVVDVDYQRTPCRFPGYNLIFKVVEHSRFPHYLAIVPMFYNGEQDIHGVELQPEGGDKWISMNKAWGAVWDLP VPPTGALKLRVKVRNVNGEEKLIEANKALPSSWKPGAGYDSRVQLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	0	1
AT3G54880			unknown protein		Lus10038690 [exp]	1.0	0.7654
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10041419 [exp]	3.7	0.7645
AT4G18260			Cytochrome b561/ferric reducta...		Lus10020757 [exp]	6.7	0.7554
AT5G07800			Flavin-binding monooxygenase f...		Lus10003474 [exp]	6.7	0.7451
AT1G22790			unknown protein		Lus10028733 [exp]	7.3	0.7146
AT4G35690			Arabidopsis protein of unknown...		Lus10041834 [exp]	8.9	0.7153
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10014123 [exp]	13.9	0.7352
AT5G18460			Protein of Unknown Function (D...		Lus10004766 [exp]	17.4	0.7546
AT1G09160			Protein phosphatase 2C family ...		Lus10020666 [exp]	18.4	0.7012
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10007748 [exp]	18.7	0.7331

Compare expression of checked genes

Lus10040149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.