Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35160 540 / 0 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT5G13960 320 / 3e-99 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT5G04940 314 / 3e-96 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT1G73100 313 / 7e-96 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT4G13460 281 / 3e-84 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) AT2G33290 278 / 7e-83 SDG3, ATSUVH2, SUVH2 SET DOMAIN-CONTAINING PROTEIN 3, SU(VAR)3-9 homolog 2 (.1) AT1G17770 266 / 5e-78 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT2G24740 260 / 2e-75 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47150 143 / 2e-37 YDG/SRA domain-containing protein (.1) AT5G47160 144 / 4e-37 YDG/SRA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001011 [exp] 660 / 0 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 645 / 0 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10031984 [exp] 351 / 1e-109 AT5G13960 764 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10041515 [exp] 338 / 5e-105 AT5G13960 792 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10029470 [exp] 331 / 2e-102 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10035115 [exp] 316 / 2e-96 AT5G13960 716 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Lus10008681 [exp] 313 / 6e-96 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 307 / 1e-93 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10023714 [exp] 287 / 4e-86 AT4G13460 759 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083100 [exp] 581 / 0 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.006G027600 [exp] 333 / 3e-103 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.016G025300 [exp] 330 / 2e-102 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.002G237950 [exp] 330 / 7e-102 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.003G188700 [exp] 329 / 1e-101 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 319 / 4e-98 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.008G173100 [exp] 301 / 3e-91 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.014G143900 [exp] 301 / 4e-91 AT5G13960 706 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.010G064300 [exp] 297 / 2e-89 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.003G162801 [exp] 294 / 1e-87 AT5G13960 529 / 8e-180 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10040150 pacid=23173942 polypeptide=Lus10040150 locus=Lus10040150.g ID=Lus10040150.BGIv1.0 annot-version=v1.0 ATGGGGATTTCAGACAATGATGTGCTGCAAGCGAAATCGAGGAACGTAGTTTCTTCAGGAAGTAGTCCTCGTTCTGAGTGGAAATCCGATTCAGTACAGG ATGGTGGTGGTGCTGAGCATAAGTTTAAGCAGCGGAGAGTTTCGGGTTTAAGAGAATATCCTGCTGGTTGTGGTCCGCCGATAGATTCAATGCCGGGTAA ATTAGAAGTCTCCAGTGTCAACGGGACAAATTCAGCGGGTTTGGAGAAGGAAAATAGTGATGTTGATGGTATCGGTGGAACCAGGATTCAGTCTGACCAT TTGACAGCACCACCACCAAGTATGGATACAACGAATTTGGATGATGCGGGTGTTTTGGATGTTAAATATCCTCCTAAGAGAAGGGTGTCAGGTGTTAGAG ACTTCCCTGAGAACTGTGGAAGAAATGCTGAATCTTTTAGCAAGGTGGAAAAAGGAAAAGACCCTACGATGAATGTCGGAGATCACCAGCGTGAGTTTGG AAGAGACGTCTTAGAAAAGAGGAGTTATAAGGTTGCTGCCAGAAAAAGCAGTGTGAAGTTGTATGTCCCTAATTATGATGGTCACAAGGTTGCAGCAGAA AAGGGTGTGGCGTTGGATTTCAAGTCATCAAGCAGGTTTTCTCTGACCAAGGGCGTCATGGCCTCTGGGTCTAGAAACTTTCTCATTAATGGACGTCAAA GAAAACCAGAGCAAAGAAAACCGTTGGCTAAGAACAAAGCGGCGACTATAAGGGTAAGACGCAATATTGTCCGAATGGAAAAGACTGATGTGGCTATGCA CAAAGTGGCTGAACGGAATGGACCAGATGATGCAGATGATGATGATAAATGTAATGATTACCTATCAGTTACGAGGAGGATTGATTCAAGCGTAAACCCG GATCCTTCTGGTCCTAGCATTTTGAATGGCTTCAACAGTCACAGAAAGAAGGTGAGTGAGTTATTACGTGAGTTTCACAAGATTTGTAGGAGGAGTGAAG GACATGTCAAGCGGGTAGATTGCTTTGCTTTCGGACAACTTAAGAACAGAGGAATGTGTCTTAACCAAGGCATACCTATCATTGGAGCTATCCCGGGAGT TGAAGTTGGCGATGAGTTTCAATATAGGCTTGAATTTAACCTGATTGGTCTTCATCGCCCTCCTGTTGCTGGTATTGATTCTGTACGACAAGGTAACATT ACCATAGCAGTGAGTGTGGTGGCATCCGGGGGATATAATGATAACCTAGATGAATCGGATGTTCTAGATTACACCGGTCAAGGAGGACAAAAGACAAGGA CCAAGGAAGCTGAAGATCAAAAGCTTGAAAATAATAATCTTGCTTTGAAGAATAGTATTAAGGAGAAAAATCCTGTAAGAGTGATTCGTGGAGATGTGTC GGATTCGGCTGATGCTAAAGGTAAGATTTATGTATACGATGGTTTATATACGGTTGAGAGCTATAAGCAGGAACAAGGACCAAACGGTTACCTGGTCTTT AGGTTTCACATGGTTCGGATTCCAGGTCAGCCAGAGCTGACTTGGAAACAAGTGAGGAAATTCAAAAAATCAAAAGTGCGGGTGGGTCTAAAGGTAACTG ATATATCACGAGGCAAAGAGTTAACTCCTATATGTGCCGTGAACACAGTAGACGACGAGCAGCCCCCGCCATTTAAATACATCACTGAGATGATATATCC AAATCATCCTACGCGCCCAAATGGTTGTGGCTGTCGTAGTGGGTGCTCTCAATCTAGTGGATGTTCTTGCCTGGGGAGGAACGGTGGAGAGTTTCCTTAC AACCACAGTGGAGCGATTGTTGAAGTGAAAGATCTCGTCTACGAGTGTGGTATTTCTTGCAAGTGTCCTCCTTCTTGCTACAACAGAGTCACCCAAAAAG GTATCAGATTTCAGCTTGAAATTTTCAAAACGGGTTCAAGGGGTTGGGGTGTTAGATCACTGAACTCAATTGCGTCCGGAAGTTTTATCTGTGAGTATAT CGGGGAACTTCTTGAAGATAATGAGGCAGAACGAAGAACTAATGACGAATATCTGTTCGATATTGGAAGACGTCGTGACAATGGCGAGCCCGATGATGCA CAGTCGAGTGATCAGAAAGCTGTGCAGGATTCTAACTTCACAATTGATGCTGCTAAGTATGGAAATGTAGGGAGGTTCATCAACCACAGCTGCACCCCAA ATTTGTATGCCCAGAATATGCTCTTCGGTCATGGAGACCCGAAGATCCCTCACATAATGCTCTTTGCGCTGGAAAACATTCCTCCTTTGCGAGAATTGAC TTACAACTACAATTATCAGTTACATACAGTTCATGACTCTCATGGCAACATCAAGAAGAAAAGCTGCTACTGCGGCTCTGCAGAGTGCAGAGGCCGGATG TACTGA
AA sequence Show only first row Show all	>Lus10040150 pacid=23173942 polypeptide=Lus10040150 locus=Lus10040150.g ID=Lus10040150.BGIv1.0 annot-version=v1.0 MGISDNDVLQAKSRNVVSSGSSPRSEWKSDSVQDGGGAEHKFKQRRVSGLREYPAGCGPPIDSMPGKLEVSSVNGTNSAGLEKENSDVDGIGGTRIQSDH LTAPPPSMDTTNLDDAGVLDVKYPPKRRVSGVRDFPENCGRNAESFSKVEKGKDPTMNVGDHQREFGRDVLEKRSYKVAARKSSVKLYVPNYDGHKVAAE KGVALDFKSSSRFSLTKGVMASGSRNFLINGRQRKPEQRKPLAKNKAATIRVRRNIVRMEKTDVAMHKVAERNGPDDADDDDKCNDYLSVTRRIDSSVNP DPSGPSILNGFNSHRKKVSELLREFHKICRRSEGHVKRVDCFAFGQLKNRGMCLNQGIPIIGAIPGVEVGDEFQYRLEFNLIGLHRPPVAGIDSVRQGNI TIAVSVVASGGYNDNLDESDVLDYTGQGGQKTRTKEAEDQKLENNNLALKNSIKEKNPVRVIRGDVSDSADAKGKIYVYDGLYTVESYKQEQGPNGYLVF RFHMVRIPGQPELTWKQVRKFKKSKVRVGLKVTDISRGKELTPICAVNTVDDEQPPPFKYITEMIYPNHPTRPNGCGCRSGCSQSSGCSCLGRNGGEFPY NHSGAIVEVKDLVYECGISCKCPPSCYNRVTQKGIRFQLEIFKTGSRGWGVRSLNSIASGSFICEYIGELLEDNEAERRTNDEYLFDIGRRRDNGEPDDA QSSDQKAVQDSNFTIDAAKYGNVGRFINHSCTPNLYAQNMLFGHGDPKIPHIMLFALENIPPLRELTYNYNYQLHTVHDSHGNIKKKSCYCGSAECRGRM Y

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10040150 [exp]	0	1
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	2.4	0.9676
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	4.2	0.9605
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	4.9	0.9624
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	7.5	0.9455
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	9.2	0.9577
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	9.8	0.9512
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	10.2	0.9546
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10042576 [exp]	10.9	0.9479
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	13.1	0.9452
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	14.5	0.9433

Compare expression of checked genes

Lus10040150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.