Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58720 53 / 7e-09 RING/U-box superfamily protein (.1.2) AT3G19950 50 / 1e-07 RING/U-box superfamily protein (.1) AT2G39720 48 / 9e-07 RHC2A RING-H2 finger C2A (.1) AT5G64920 47 / 2e-06 CIP8 COP1-interacting protein 8 (.1) AT1G80400 45 / 5e-06 RING/U-box superfamily protein (.1) AT5G59550 45 / 6e-06 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G56340 44 / 1e-05 ATCRT1 RING/U-box superfamily protein (.1) AT3G46620 44 / 2e-05 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G02340 44 / 3e-05 RING/U-box superfamily protein (.1) AT5G08139 44 / 3e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006449 [exp] 51 / 5e-08 AT4G26400 69 / 2e-13 RING/U-box superfamily protein (.1.2) Lus10011392 [exp] 49 / 5e-07 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10017722 [exp] 48 / 6e-07 AT3G19950 64 / 5e-12 RING/U-box superfamily protein (.1) Lus10010179 [exp] 48 / 8e-07 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10012819 [exp] 47 / 1e-06 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10013397 [exp] 47 / 3e-06 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10033682 [exp] 45 / 5e-06 AT3G19950 67 / 5e-13 RING/U-box superfamily protein (.1) Lus10030755 [exp] 45 / 7e-06 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10030464 [exp] 45 / 8e-06 AT1G26800 181 / 3e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090500 [exp] 54 / 7e-09 AT3G19950 279 / 4e-93 RING/U-box superfamily protein (.1) Potri.001G231000 [exp] 52 / 1e-08 AT3G60080 100 / 3e-25 RING/U-box superfamily protein (.1) Potri.015G028400 [exp] 52 / 3e-08 AT3G19950 256 / 2e-83 RING/U-box superfamily protein (.1) Potri.007G074014 [exp] 51 / 7e-08 AT3G19950 278 / 5e-93 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 50 / 2e-07 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.014G139400 [exp] 47 / 2e-06 AT3G58720 163 / 3e-49 RING/U-box superfamily protein (.1.2) Potri.019G086601 [exp] 46 / 3e-06 AT1G14200 60 / 3e-11 RING/U-box superfamily protein (.1) Potri.008G087200 [exp] 45 / 6e-06 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1) Potri.006G032100 [exp] 45 / 7e-06 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.003G223200 [exp] 45 / 1e-05 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10040151 pacid=23174093 polypeptide=Lus10040151 locus=Lus10040151.g ID=Lus10040151.BGIv1.0 annot-version=v1.0 ATGATTTCAGAAGATTCTCTGTACGTCGCAATTAAGAGAGCGCTGAGATCAGAGCACGGAGCAATTGCCACCGGCGATTGTAAAGCCGACAAATTTCTGG CCGCAATGTTGGTCATCGTTCGGTCAGATTCTGGATTTGCTGCCATGGTTCGTTGCTCCGCCTCTTTCAGGCGGTACGTGGCTGAGCTATGTTTAGATAA ACTAGTATCCTGGTTGCAGGAGCAGGATCAAATAGCGATGATCCAGAAGGTGTTGGTCGAGGTTAAAGAAACAGAAGCCATCATGGAAGATCAGGCAATG TCGGGAACGGCGGCGGTGTGCTGCGTTTGTTTAGATAATATGTTCCCCTCAGCTGGCGCCTGCCCACCAGTGAAGAAGACGTCGTGCAATCATCTTTTCC ACGCTGACTGCATCCTCGACTGGCTGCTCGTCAGCGACCAATTCGGCGGCGGCGGCTATTGTCCTATTTGTAGGTTTCAGATCTTGTCGCCGGTCTCTGC TTCATCTTTTTAA
AA sequence Show only first row Show all	>Lus10040151 pacid=23174093 polypeptide=Lus10040151 locus=Lus10040151.g ID=Lus10040151.BGIv1.0 annot-version=v1.0 MISEDSLYVAIKRALRSEHGAIATGDCKADKFLAAMLVIVRSDSGFAAMVRCSASFRRYVAELCLDKLVSWLQEQDQIAMIQKVLVEVKETEAIMEDQAM SGTAAVCCVCLDNMFPSAGACPPVKKTSCNHLFHADCILDWLLVSDQFGGGGYCPICRFQILSPVSASSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	0	1
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	2.4	0.9161
AT2G40200	bHLH	bHLH051	basic helix-loop-helix (bHLH) ...		Lus10028978 [exp]	2.8	0.8896
AT4G33920			Protein phosphatase 2C family ...		Lus10011521 [exp]	3.6	0.8637
					Lus10005747 [exp]	3.9	0.8917
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	4.0	0.9059
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10032585 [exp]	6.7	0.8822
AT1G69930		ATGSTU11	glutathione S-transferase TAU ...		Lus10026722 [exp]	6.7	0.8779
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10008529 [exp]	7.1	0.8730
AT2G46640			unknown protein		Lus10005993 [exp]	7.3	0.8821
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10022316 [exp]	9.9	0.8615

Compare expression of checked genes

Lus10040151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.