Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43680 177 / 2e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004356 [exp] 488 / 5e-175 AT5G43680 174 / 5e-53 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G045500 [exp] 335 / 2e-116 AT5G43680 194 / 8e-62 unknown protein Potri.005G053400 [exp] 40 / 0.0006 AT5G28750 117 / 3e-34 Bacterial sec-independent translocation protein mttA/Hcf106 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040152 pacid=23174142 polypeptide=Lus10040152 locus=Lus10040152.g ID=Lus10040152.BGIv1.0 annot-version=v1.0 ATGTTTGGTATCTCTTATGGCGAACTCTTCATCTTGCTTGGAGCCACCGTAGCTCTAATTGGGCCGAAAGATTTGCCTATAATAGCAAGGACTGCTGGGA GGCTAACTGGTCGAGCTATAGCATATGTTCAATTGGCTCGTGGCCAGTTTGAGTCTGTGATGCAGCAATCTCAAGCTCGTCAGGTTCACAAGGAACTTCA AGATAAGATGGCTCAAATGGAGTCCATACTTTATGAGATTAGAAGCACTTCTATGTTGAGACCTGGACCAATGACTAGGAAGATTATTGATGATCTTGAT AACTCATCGAAAGCTAATGACAATGAAGAGGCAGCCAATTCTGGTGTAGTAAATGTGTCAACAGCTACTGTCTCTCAAGTTTCTACCGAACAAAGTCATA CTGCCAGTATATCAACAAGTACCGTCTCAAAGATCTACACTTCGAAAATCTCAGATAATACCAATATGCACAGCCAAGCAACTGCTTATGCTAGATTGGC AGAATCTGCAGCCCTCAAAGCTAGTATGTCACAGAATGGTTTGGATTCAAGACAGCAGATGGACGATCTTGGTCTCATTAATATCTTGCCAGTATCGGCC GAGAGCACTGGGATGTTACCTAATCGTCAAGGAAATGCGAATGGATCTGATATTTTGTTGGAAGCGATATTGGAGGCTGAGGTGGCTCACAACGCTAAAG ATTTCTTCGCACAACCTGAAAATCAAATAAAGCAAGAAGGAGAGGTGATGCTCCTTTTATGCTTTGTTTTAATGTTGGTGAAAGCAAATCCGAATTTCAA GCCGAGAACGAAAACCTTTTTCACTAAAAACTTAATAATTGCATGTAACATTGGCAACGATGACATTTTGCAGGTAGAGAAGAGATGA
AA sequence Show only first row Show all	>Lus10040152 pacid=23174142 polypeptide=Lus10040152 locus=Lus10040152.g ID=Lus10040152.BGIv1.0 annot-version=v1.0 MFGISYGELFILLGATVALIGPKDLPIIARTAGRLTGRAIAYVQLARGQFESVMQQSQARQVHKELQDKMAQMESILYEIRSTSMLRPGPMTRKIIDDLD NSSKANDNEEAANSGVVNVSTATVSQVSTEQSHTASISTSTVSKIYTSKISDNTNMHSQATAYARLAESAALKASMSQNGLDSRQQMDDLGLINILPVSA ESTGMLPNRQGNANGSDILLEAILEAEVAHNAKDFFAQPENQIKQEGEVMLLLCFVLMLVKANPNFKPRTKTFFTKNLIIACNIGNDDILQVEKR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43680			unknown protein		Lus10040152 [exp]	0	1
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	2.4	0.8693
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10029574 [exp]	3.5	0.8653
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	5.9	0.8440
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	7.3	0.8452
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10043175 [exp]	8.2	0.8796
AT1G69450			Early-responsive to dehydratio...		Lus10036791 [exp]	14.5	0.8147
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006304 [exp]	23.5	0.8409
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	33.7	0.8565
AT2G31600			unknown protein		Lus10026896 [exp]	36.1	0.8174
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10034105 [exp]	36.2	0.8089

Compare expression of checked genes

Lus10040152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.