Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16970 354 / 2e-115 Protein kinase superfamily protein (.1) AT3G01085 63 / 1e-10 Protein kinase superfamily protein (.1) AT3G05840 61 / 3e-10 ATSK12 Protein kinase superfamily protein (.1.2) AT3G45640 61 / 4e-10 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT5G26751 60 / 9e-10 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) AT4G13020 59 / 1e-09 MHK Protein kinase superfamily protein (.1.2.3.4.5) AT5G14640 59 / 2e-09 ATSK13 shaggy-like kinase 13 (.1) AT4G10010 58 / 4e-09 Protein kinase superfamily protein (.1) AT1G01560 57 / 4e-09 ATMPK11 MAP kinase 11 (.1.2) AT1G06390 57 / 5e-09 ATGSK1, GSK1, ATSK22, BIL2, ATSK2-3 BIN2-LIKE 2, SHAGGY-LIKE PROTEIN KINASE 22, A. THALIANA SHAGGY-LIKE KINASE GROUP 2 3, GSK3/SHAGGY-like protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004357 [exp] 601 / 0 AT4G16970 589 / 0.0 Protein kinase superfamily protein (.1) Lus10031440 [exp] 62 / 2e-10 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10001519 [exp] 62 / 2e-10 AT5G26751 790 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Lus10013088 [exp] 61 / 6e-10 AT5G14640 741 / 0.0 shaggy-like kinase 13 (.1) Lus10018850 [exp] 59 / 2e-09 AT4G00720 747 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10041360 [exp] 59 / 2e-09 AT4G00720 731 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10036568 [exp] 59 / 2e-09 AT4G00720 733 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1) Lus10022254 [exp] 59 / 2e-09 AT5G14640 738 / 0.0 shaggy-like kinase 13 (.1) Lus10006800 [exp] 59 / 3e-09 AT1G53050 449 / 7e-151 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G151900 [exp] 397 / 2e-132 AT4G16970 615 / 0.0 Protein kinase superfamily protein (.1) Potri.003G082600 [exp] 392 / 7e-129 AT4G16970 603 / 0.0 Protein kinase superfamily protein (.1) Potri.013G004700 [exp] 64 / 3e-11 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.005G005400 [exp] 63 / 9e-11 AT5G26751 789 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.015G103300 [exp] 61 / 4e-10 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.017G010200 [exp] 60 / 6e-10 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.002G190500 [exp] 60 / 1e-09 AT5G26751 781 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.014G115600 [exp] 59 / 1e-09 AT5G26751 782 / 0.0 ARABIDOPSIS THALIANA SHAGGY-RELATED KINASE 11, shaggy-related kinase 11 (.1) Potri.013G100100 [exp] 59 / 2e-09 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G155000 [exp] 59 / 2e-09 AT4G00720 772 / 0.0 SHAGGY-LIKE PROTEIN KINASE THETA, shaggy-like protein kinase 32 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040153 pacid=23174020 polypeptide=Lus10040153 locus=Lus10040153.g ID=Lus10040153.BGIv1.0 annot-version=v1.0 ATGCTTCAAAAGCCCAAATCTTTTCAGCTTCAGAATTCTAAATCCTTGGATATAGTCAGTCGTGATGAATCAAAAGGTTCGAAGAAAATTTTTTTAGAAC CAAGGAACTCGAAAAATAAGACTGGTGGCTCCTGGATGGCTCAGGATGGCAAGAGTCAATGGAATTTCACACAAAGCCAAGGTGCAGAAGGTTCAGGAAT AACTTCTGTAAAGGACGTGACCAGTACTAGGACGCCTTCAGCGGAAAGGGTAAGACAGCCGTTACCATTTCATGGCAGGAAGGGGCTCTTGAATTTTTTG AAGGATGCAATAGATTCCTCAGATCACGAAGCATCAAGCGTTCCTACTTCTGTAAGGAAGAGGGTTGCTGCACCTCCTTCTGAGGTGGATAGACGACATA TATATGTTACTCCAATGCCTCTGCAATCATTTAGCACAACAATTACAGTTACTGGCTTAACCAATAGTAAAGATGCAATGTTGAAGAAAGAAGGGCCTTG TGTCGGAACGAAAGGTTTCCGTGCTCCAGAGGTATTGCTGAGATCTCCGTATCAAAGTCCCAAGGTTGATTCATGGTCGGCTGGGGTAACCTTACTTTAT CTAATGATTGGAAGAACGCCTTTCTATGGTGAACCTGAACAGAACATAAAGGAAATAGCTAAGTTAAGAGGCAGTGAAGATCTTTGGGAGGTTGCAAAGC TACACGATCGGGAATCCTCATTTCCACCGGATCTCTACACCAGTCAGTACCTACCATCCTTTTCACTCCGGGAATGGTGCAAAATCAACACCAAAAGAAG CGATTTTCTCAAGCAAGTGCCGGCTTCACTCGTGGATCTTGTTGACAAGTGTTTAACAGTAAACCCGAGATCCAGAATCAGAGCCGAAGATGCTCTAAAC CACGATTTTTTCGCTCCAATAAACGAGAGGCTCAAGAAGCCGAAGCTGGTTCGACAGGGTTCTAACAATGACTCAGGCTCTAGGCTTGCCCTACACGGGC AAAGCTCGACGGAACCTTAG
AA sequence Show only first row Show all	>Lus10040153 pacid=23174020 polypeptide=Lus10040153 locus=Lus10040153.g ID=Lus10040153.BGIv1.0 annot-version=v1.0 MLQKPKSFQLQNSKSLDIVSRDESKGSKKIFLEPRNSKNKTGGSWMAQDGKSQWNFTQSQGAEGSGITSVKDVTSTRTPSAERVRQPLPFHGRKGLLNFL KDAIDSSDHEASSVPTSVRKRVAAPPSEVDRRHIYVTPMPLQSFSTTITVTGLTNSKDAMLKKEGPCVGTKGFRAPEVLLRSPYQSPKVDSWSAGVTLLY LMIGRTPFYGEPEQNIKEIAKLRGSEDLWEVAKLHDRESSFPPDLYTSQYLPSFSLREWCKINTKRSDFLKQVPASLVDLVDKCLTVNPRSRIRAEDALN HDFFAPINERLKKPKLVRQGSNNDSGSRLALHGQSSTEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16970			Protein kinase superfamily pro...		Lus10040153 [exp]	0	1
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	1.4	0.9719
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Lus10033283 [exp]	3.5	0.9618
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	3.9	0.9636
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	4.0	0.9674
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10001430 [exp]	5.7	0.9204
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	7.7	0.9424
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	8.4	0.9127
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	9.2	0.9354
AT5G22090			Protein of unknown function (D...		Lus10013353 [exp]	9.5	0.9192
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10040791 [exp]	10.6	0.9107

Compare expression of checked genes

Lus10040153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.