Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17550 706 / 0 AtG3Pp4 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) AT3G47420 546 / 0 AtG3Pp1, ATPS3 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) AT1G30560 504 / 1e-175 AtG3Pp3 glycerol-3-phosphate permease 3, Major facilitator superfamily protein (.1) AT2G13100 489 / 6e-170 AtG3Pp5 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) AT4G25220 467 / 7e-161 AtG3Pp2, RHS15 glycerol-3-phosphate permease 2, root hair specific 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004358 [exp] 989 / 0 AT4G17550 725 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Lus10031153 [exp] 526 / 0 AT3G47420 695 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027210 [exp] 525 / 0 AT3G47420 705 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10040002 [exp] 492 / 1e-170 AT2G13100 708 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3) Lus10038923 [exp] 459 / 2e-159 AT3G47420 586 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10027211 [exp] 343 / 7e-115 AT3G47420 454 / 9e-159 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Lus10031729 [exp] 110 / 5e-29 AT3G47420 155 / 2e-46 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152300 [exp] 747 / 0 AT4G17550 692 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.003G082366 [exp] 706 / 0 AT4G17550 624 / 0.0 glycerol-3-phosphate permease 4, Major facilitator superfamily protein (.1) Potri.001G124200 [exp] 561 / 0 AT3G47420 711 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.003G109300 [exp] 552 / 0 AT3G47420 694 / 0.0 Glycerol-3-phosphate permease 1, phosphate starvation-induced gene 3 (.1) Potri.018G115000 [exp] 520 / 0 AT2G13100 699 / 0.0 glycerol-3-phosphate permease 5, Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10040154 pacid=23173953 polypeptide=Lus10040154 locus=Lus10040154.g ID=Lus10040154.BGIv1.0 annot-version=v1.0 ATGGACAGCAATTTCTCGCTGACTAGGCAAATTCCGCCAGGAATTACGCTTCTCAGAGCGATCAGAGGTCGAGATTGGACTCTCAGAACCTACCGGTACA TGATCCTGCTCATCACCTTCATCGCCTACGCATGCTACCATGCTTCGAGGAAACCCAGCAGCATCGTCAAGAGCGTTCTCGATCCGGATCCGGCTAAACC ATTGAATGTATCTTTAGGTAACGACCCTTACCCTTGGCCGATCGGAAAAGTGTTTATCACGACCGAAATGAATCTTTCTAATGTGAGCAAGAAAGGATGG GAGCCGTTCAACGGGAAAGACGGGACGTCGAAATTGGGCGAAATCGATGTCGCGTTCCTTGCGTGCTACTCGTTCGGCATGTACATCGCCGGGCATTTAG GAGATAAGCTTGATCTGCGGCTCTTCTTGACGTCCGGGATGGTTGGGAGTGGGATATTCGTAGGGCTGTTTGGGATGGGGTACTTCTGGAATGTTCATGT GTTCTGGTTCTATTTGGCGATGCAAATGGTTGCTGGATTGTTCCAAGCCACGGGATGGCCTTCTGTTGTGGCTGTGATCGGTAATTGGTTTGGGAAGAGG AAGAGAGGGCTGATCATGGGGATATGGAATGCGCATACCTCAGTTGGAAACATAAGCGGTTCGCTTCTTGCTGCTGCAGTATTGAGCTATGGATGGGGAT GGTGTTTCATTGTTCCTGGTGCTTTCATTGTTTTAGGAGGAATACTGGTCTTCTTTTTGCTGGCTGCTTATCCTGAGGATATTGGGTTTACTTATGGCCA GTTGATGGCTAGTGATGATAAGGGGCAAGATGTGGAGGATCAGAACCGTAGTGCGCCGGTTGGTGCTGGCAATGATGCTTATGGATCGGGACTTAGGACG AGTGTCGGGCTTCTTGAAGCTTGTTCGATACCAGGAGTTATACCGTTTGCATTGTGTTTGTTCTTCTCCAAACTTGTGGCCTATACATTCTTGTACTGGT TGCCTTTCTACCTGAGCCAGACAGAAATTGGTGGGGAGTTCATGTCTGTGAAGTCTGCTGGAAATCTCTCTACTCTGTTTGACGTAGGAGGCATAGTTGG CGGGATCCTTGCCGGATACATATCTGACAGGCTTAAAGCTCGAGCTATAACAGCAGCTACTTTCATGTATTTGGCAATTCCAGCCATGCTGCTATACCGC TGGTACGGGAGTGTCTCCCAATCTCTGAACATCGTACTGATGATGATTGCTGGCTTATTTGTGAATGGCCCATATGCGCTTATCACTACAGCCGTCTCTG CTGACCTTGGCACCCACAGTTCTCTTAGAGGGGATTCTCGAGCACTGGCTACTGTGACTGCTATCATTGACGGAACTGGATCGATTGGAGCAGCCCTTGG TCCTCTTCTCACTGGGTTCTTATCGACACATGGATGGAATTTGGTGTTTGTGATGCTGATGCTTTGTGCTCTAGTTGCTGGGCTTCTGTTAACACGTCTG GTCATTGCTGAAATTGCAGAAAAAGCTGATCGGCCAATGCCTGGACAAACTGCTCCAGGAACCGAGCCACTTCTAGGAAATCGGAGGTGA
AA sequence Show only first row Show all	>Lus10040154 pacid=23173953 polypeptide=Lus10040154 locus=Lus10040154.g ID=Lus10040154.BGIv1.0 annot-version=v1.0 MDSNFSLTRQIPPGITLLRAIRGRDWTLRTYRYMILLITFIAYACYHASRKPSSIVKSVLDPDPAKPLNVSLGNDPYPWPIGKVFITTEMNLSNVSKKGW EPFNGKDGTSKLGEIDVAFLACYSFGMYIAGHLGDKLDLRLFLTSGMVGSGIFVGLFGMGYFWNVHVFWFYLAMQMVAGLFQATGWPSVVAVIGNWFGKR KRGLIMGIWNAHTSVGNISGSLLAAAVLSYGWGWCFIVPGAFIVLGGILVFFLLAAYPEDIGFTYGQLMASDDKGQDVEDQNRSAPVGAGNDAYGSGLRT SVGLLEACSIPGVIPFALCLFFSKLVAYTFLYWLPFYLSQTEIGGEFMSVKSAGNLSTLFDVGGIVGGILAGYISDRLKARAITAATFMYLAIPAMLLYR WYGSVSQSLNIVLMMIAGLFVNGPYALITTAVSADLGTHSSLRGDSRALATVTAIIDGTGSIGAALGPLLTGFLSTHGWNLVFVMLMLCALVAGLLLTRL VIAEIAEKADRPMPGQTAPGTEPLLGNRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17550		AtG3Pp4	glycerol-3-phosphate permease ...		Lus10040154 [exp]	0	1
AT1G27340			Galactose oxidase/kelch repeat...		Lus10037030 [exp]	10.5	0.9015
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	11.8	0.9075
AT5G36930			Disease resistance protein (TI...		Lus10035674 [exp]	13.5	0.8273
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10038538 [exp]	18.8	0.9024
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	25.1	0.8888
AT5G24430			Calcium-dependent protein kina...		Lus10008875 [exp]	28.6	0.8713
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10024049 [exp]	30.4	0.8314
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10033144 [exp]	31.2	0.8750
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10020725 [exp]	31.3	0.8818
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	33.5	0.8867

Compare expression of checked genes

Lus10040154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.