Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17540 174 / 1e-52 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004359 [exp] 442 / 1e-157 AT4G17540 216 / 6e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082200 [exp] 244 / 1e-79 AT4G17540 203 / 1e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040155 pacid=23173936 polypeptide=Lus10040155 locus=Lus10040155.g ID=Lus10040155.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGGTTGTCGACAGCTGGAACTGGAACTATGGAGGTGAACGATCCGAGTAGAAGAAACCCTTTTGGAGAAGGAGGGATGATTAAAATGGAGA ATCCGTTTGCTTTGAAAGTGGGTCAAGTATTTACTGGCTTTGGCATTGGTTGTGGGGTTGGTATCGGCCATGGCCGCCCCATAAATCTCGGTGCACTGCC GATGGTGAATCAACTTCTTAGTGCCACTAGAGGCGCCACTGATGCTTTTTCAGGTGTTACAAGACAAGTCAACAATGCATTAAGGAAGGTGGGAGCAAAC AACATACAGGTCGGGGTTGGTTGTGGAGTTGGTTTCGGCCATGGATTCGGAGTCGGTACGTTGTTCCCTGTGTGTCTCATTTCTCAAGCCATTTGTATTG CTGTAAAACCTAGCGCGTTGCATAAAATTCAGGCTTGTTTGTTGGAAGCAGCTACCAAAGTTGCGATGAAATTCGGAGGACTTCCCAACACGTCAATCGT TCAAGGTGGCTTTCCAATCTCTTTTCCAGGTGCCACCGGCGTAGCTGGTGAACCGACATTCCATAGTCCTACTACACAGATAGGAATTCAAGGAATTCAT AAGGATGTAGCTGATTCATCTTTTGCTAGAACTGAACATGTTCTAACCAGCTTTCTCCAGAATCCAATCCTCAAGCAAGAAGATGATCCTCCCCTCAAAC AAGCGGCAGGACGTCTGCAGGCAGAAAACAGCATGCTTCAAATGGTTCTGAAACACCAGCAGATCATTGAGGACCTCGTGGAAGAGAACAAGAAGCTGCG CCAAATACTAGTGGAAGACCTTAAAGTACCAGCAAGTAAAATTCAGGATAGTTACTCAACTACAACTCAGCCCCCCTGTTCAGATTGTTTTGATTGTCGA AGAAAACAAAGAAAAAGAAGATGA
AA sequence Show only first row Show all	>Lus10040155 pacid=23173936 polypeptide=Lus10040155 locus=Lus10040155.g ID=Lus10040155.BGIv1.0 annot-version=v1.0 MEEGLSTAGTGTMEVNDPSRRNPFGEGGMIKMENPFALKVGQVFTGFGIGCGVGIGHGRPINLGALPMVNQLLSATRGATDAFSGVTRQVNNALRKVGAN NIQVGVGCGVGFGHGFGVGTLFPVCLISQAICIAVKPSALHKIQACLLEAATKVAMKFGGLPNTSIVQGGFPISFPGATGVAGEPTFHSPTTQIGIQGIH KDVADSSFARTEHVLTSFLQNPILKQEDDPPLKQAAGRLQAENSMLQMVLKHQQIIEDLVEENKKLRQILVEDLKVPASKIQDSYSTTTQPPCSDCFDCR RKQRKRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17540			unknown protein		Lus10040155 [exp]	0	1
AT5G14500			aldose 1-epimerase family prot...		Lus10014621 [exp]	6.0	0.8810
AT2G38430			unknown protein		Lus10003276 [exp]	6.3	0.8423
					Lus10035158 [exp]	6.7	0.8874
AT2G34540			unknown protein		Lus10042827 [exp]	9.3	0.8215
AT1G75210			HAD-superfamily hydrolase, sub...		Lus10032712 [exp]	10.4	0.8655
AT3G18260			Reticulon family protein (.1)		Lus10032451 [exp]	16.4	0.8720
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10003813 [exp]	17.0	0.8602
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10010944 [exp]	17.2	0.8655
AT2G42820		HVA22F	HVA22-like protein F (.1)		Lus10031386 [exp]	24.1	0.8627
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10019611 [exp]	25.0	0.7418

Compare expression of checked genes

Lus10040155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.