Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02890 208 / 4e-64 HXXXD-type acyl-transferase family protein (.1) AT4G29250 76 / 1e-14 HXXXD-type acyl-transferase family protein (.1) AT3G23840 61 / 5e-10 HXXXD-type acyl-transferase family protein (.1) AT4G24510 60 / 1e-09 VC2, VC-2, CER2 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) AT1G65450 52 / 4e-07 HXXXD-type acyl-transferase family protein (.1.2.3) AT4G13840 50 / 1e-06 HXXXD-type acyl-transferase family protein (.1) AT4G31910 50 / 2e-06 HXXXD-type acyl-transferase family protein (.1) AT2G19070 49 / 5e-06 SHT spermidine hydroxycinnamoyl transferase (.1) AT3G30280 48 / 9e-06 HXXXD-type acyl-transferase family protein (.1) AT5G48930 45 / 5e-05 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004360 [exp] 673 / 0 AT5G02890 220 / 1e-68 HXXXD-type acyl-transferase family protein (.1) Lus10011003 [exp] 362 / 1e-123 AT5G02890 213 / 5e-66 HXXXD-type acyl-transferase family protein (.1) Lus10000592 [exp] 359 / 2e-122 AT5G02890 217 / 1e-67 HXXXD-type acyl-transferase family protein (.1) Lus10028335 [exp] 66 / 2e-11 AT4G29250 365 / 1e-122 HXXXD-type acyl-transferase family protein (.1) Lus10028171 [exp] 57 / 2e-08 AT4G24510 289 / 8e-94 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Lus10041782 [exp] 56 / 3e-08 AT4G29250 348 / 8e-116 HXXXD-type acyl-transferase family protein (.1) Lus10016638 [exp] 54 / 1e-07 AT4G13840 315 / 2e-103 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 53 / 2e-07 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 50 / 1e-06 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G082100 [exp] 215 / 2e-66 AT5G02890 191 / 1e-57 HXXXD-type acyl-transferase family protein (.1) Potri.001G152500 [exp] 206 / 7e-63 AT5G02890 211 / 4e-65 HXXXD-type acyl-transferase family protein (.1) Potri.005G153600 [exp] 67 / 4e-12 AT4G24510 313 / 4e-103 ECERIFERUM 2, HXXXD-type acyl-transferase family protein (.1) Potri.018G032700 [exp] 62 / 2e-10 AT4G29250 437 / 5e-151 HXXXD-type acyl-transferase family protein (.1) Potri.001G319200 [exp] 58 / 5e-09 AT4G13840 356 / 6e-120 HXXXD-type acyl-transferase family protein (.1) Potri.005G230900 [exp] 58 / 5e-09 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 58 / 7e-09 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.017G029300 [exp] 52 / 5e-07 AT1G24430 252 / 3e-79 HXXXD-type acyl-transferase family protein (.1) Potri.014G166600 [exp] 51 / 1e-06 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.006G036100 [exp] 49 / 4e-06 AT3G26040 250 / 2e-78 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10040156 pacid=23173846 polypeptide=Lus10040156 locus=Lus10040156.g ID=Lus10040156.BGIv1.0 annot-version=v1.0 ATGGAAAGCAACGCCATCCCCGTGCCGCCGAAGCCACACCTCGAAGGAATCCTAACCGTGATGCCAATGGCGGTGACAGAACCCAGGAGGATCCGACACG TGTCATACGGCGGCGGTGAAGGCGGCCCATCAGTGGGTGGCTCTGGGATTCTGAAGGCATGCCTGAACGTAGTGCTGTATTATGCCTGCAGCTCGGGACC GGCCGGGGATCAGGATTCCGGTTGGGTGGCCGCCGGATGGATGAAGACGTCCCTTGCACGAGCGATGTCGGAGCAGCCTCTGATTAGCGGAAGGGTGAGA AGATGTGAAGTTGATAAAACAGGGGATTGTGAGAAGCTAGAAGTTGTGTCGAACGATAGTGGAGCTCGGCTGCTGGAGGCTACGATGCCGGTGAGTTTGT CGGAGTTTATGGAGATGGATGACAAGGTTAGAGCTGAAGCGGAAGCTGATTTGGTTTTCTGGAAGGAGATTGATGAGATTACTACCCAGTTTTCTCCCCT GTTCTACGTCCAGGTAACAAATTTCAAGTGTGGTGGGTATTCAGTAGGAATCAGCTGCAGCCTTTTAGTAGCTGACCTTCTCATAACCGACAATTTCCTC CAGAGATGGGCCCAAATTCAACAGGACGTCGTTCCCAAATTCACCGCCGGCCCCGGCAGCGACGGCGTCAGAAGGGTGAAACAGCTTCCAATTTTCTACC TTCCGAATCTGAAACCCAACGGCTCATTCCCACCCGAAGTGTTCAGCTCAACTCCAAGCAGAGGCCAGGCCCTGACCTTCCTGCTCAAATCCACACAAAA CGACGCCGGACTAATCGCATCGCTCAACGAGGCGCAGAGGAAAGTGAAGGGGGGGATAATTCCGGATAAGTTCCGGGTGGTTGAAGTAGTCGTCGGGAAG GAAGAAACTCCGGCGGTGGGTGTCTTGGAAGTGAAGACGTGGAGGAAGTCGGATGAAGCGACGGTAGGCGCGTGGGGTGATGATTGCGTCGGGAGGTGGG AGGAATTAAGGATGGGGGAGGTTTGCTTCTATGAAGGGAAGAAACCGATTGGGTTGGCTCGTTGGGTCGGTTGGCCGAATGACGATGACGGGTTGTTGAT GGCGTTTACCCACCCGATTGACGGCGGCAGTGTTGTTCTCGTTGCCGTTCCAGGTGGCGAGAAGCGACAAATATGTTAG
AA sequence Show only first row Show all	>Lus10040156 pacid=23173846 polypeptide=Lus10040156 locus=Lus10040156.g ID=Lus10040156.BGIv1.0 annot-version=v1.0 MESNAIPVPPKPHLEGILTVMPMAVTEPRRIRHVSYGGGEGGPSVGGSGILKACLNVVLYYACSSGPAGDQDSGWVAAGWMKTSLARAMSEQPLISGRVR RCEVDKTGDCEKLEVVSNDSGARLLEATMPVSLSEFMEMDDKVRAEAEADLVFWKEIDEITTQFSPLFYVQVTNFKCGGYSVGISCSLLVADLLITDNFL QRWAQIQQDVVPKFTAGPGSDGVRRVKQLPIFYLPNLKPNGSFPPEVFSSTPSRGQALTFLLKSTQNDAGLIASLNEAQRKVKGGIIPDKFRVVEVVVGK EETPAVGVLEVKTWRKSDEATVGAWGDDCVGRWEELRMGEVCFYEGKKPIGLARWVGWPNDDDGLLMAFTHPIDGGSVVLVAVPGGEKRQIC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10040156 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	3.5	0.8768
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	3.9	0.8845
AT3G12080		EMB2738	embryo defective 2738, GTP-bin...		Lus10002557 [exp]	5.5	0.8823
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010713 [exp]	6.8	0.8354
AT4G04750			Major facilitator superfamily ...		Lus10033795 [exp]	8.0	0.8719
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10030840 [exp]	9.5	0.8638
AT5G37550			unknown protein		Lus10020807 [exp]	9.5	0.8618
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10023626 [exp]	9.5	0.8680
AT5G65380			MATE efflux family protein (.1...		Lus10024945 [exp]	10.0	0.8702
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	11.0	0.8590

Compare expression of checked genes

Lus10040156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.