Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16830 102 / 5e-25 Hyaluronan / mRNA binding family (.1.2.3) AT4G17520 84 / 9e-18 Hyaluronan / mRNA binding family (.1) AT5G47210 71 / 2e-13 Hyaluronan / mRNA binding family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004362 [exp] 315 / 2e-105 AT4G17520 183 / 1e-54 Hyaluronan / mRNA binding family (.1) Lus10000599 [exp] 120 / 2e-32 AT4G17520 170 / 7e-52 Hyaluronan / mRNA binding family (.1) Lus10020479 [exp] 61 / 6e-12 ND 33 / 0.005
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G081600 [exp] 140 / 4e-38 AT4G17520 180 / 2e-53 Hyaluronan / mRNA binding family (.1) Potri.001G153000 [exp] 129 / 4e-34 AT4G17520 128 / 1e-33 Hyaluronan / mRNA binding family (.1) Potri.014G049300 [exp] 120 / 9e-31 AT4G16830 159 / 2e-46 Hyaluronan / mRNA binding family (.1.2.3) Potri.002G138300 [exp] 118 / 4e-30 AT4G17520 133 / 1e-35 Hyaluronan / mRNA binding family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04774 [flax] [poplar] HABP4_PAI-RBP1 Hyaluronan / mRNA binding family
Representative CDS sequence Show only first row Show all	>Lus10040157 pacid=23174182 polypeptide=Lus10040157 locus=Lus10040157.g ID=Lus10040157.BGIv1.0 annot-version=v1.0 ATGACGACCATGAACCCTTTTGATCTCCTCGACGGTGTCGACAACGAGGACACCGCTGCCCTCCTCGCCGCCGCTCAGCTGAAGATTGAGAAGGAAAAGG AAAAGCCAAAGGCTGCCGCTGCCGTTCCTCCTCCTCTCAACAAGCTGGCCCAGCAGAAGGCCGATATGGAAAAGAAGCCAGCTGGGAGAGATTACAGATA TGAAGGTCCTGGACGTGAAGGTGGACGCCGAGGAGGCCGTGGTGGCGGCGGCGAAGGACGAAGCTATGGCCGAGGCCGAGGAGGAAGTGGTCGTTTTGGA GGTTCCAATAACAATGAGGCTGGGTTTGGTAATAGCAATGGCTATGTGTACAAGCAATCTGAAGAGGGTGGTGAATCTCGGAGGCCGTCTGAGAGGCGTA GCAACTATGGTGGGCCTCGTGACGGTAACTACCGTGGAGGTCGCCGTGGTGAGGAAACTGGAGAAGGTGGTGAGCGTCATAAGAGGGTGTATGATCGACA CAGCGGTAGTGGACGCGGAAATGACATTAAGCGTGATGGATCTGGCTCTGGTAACTGGGGGAGCCCTACTGAAGTTGCCCCAGACACTGTGGAACCTAAT GCTGAGAATGAAGCAAATGCCACCTTTGAAAAGAAACCGAAGGAGGAAGATGCTGATGATGCCAACAAGGACATTGCCAAGGATGAGGAGAAAGAGGAGG AAAAGGAGATGACTCTGGTGGAGTGGGAGAAGTTTCGCGCTGAGCAAGGGAAGACTTCTGTTGTTTTGAAGACTACTGAGCAAAGGAAGGTTGATGCCAA AGAATTTGCATCCATGCAACAGATATCCAGTAAGAAGGAAAATGATGAAATCTTTGCCAAACTGGGTTCGGACAAGGACAAGAAGAAGGAAGCTGCGGAC AAAGAAGAGAAGGCCAGGAAGGCTGTGAGCATAAATGAGTTCCTGAAGCCTGCCGAAGGGGAGTCCTACAGAGGAGGTCGTGGTAGGGGAGGCCGTGGTG GACGTGGTGGCGGGAGAGGAGCAGGAGGATTTGGCGGGGGAGGCTACAACCGTGATGTGTCGGCTCCATCGATCGAAGACCCGGGGCAGTTCCCCTCGTT GGGTGGCAAGTGA
AA sequence Show only first row Show all	>Lus10040157 pacid=23174182 polypeptide=Lus10040157 locus=Lus10040157.g ID=Lus10040157.BGIv1.0 annot-version=v1.0 MTTMNPFDLLDGVDNEDTAALLAAAQLKIEKEKEKPKAAAAVPPPLNKLAQQKADMEKKPAGRDYRYEGPGREGGRRGGRGGGGEGRSYGRGRGGSGRFG GSNNNEAGFGNSNGYVYKQSEEGGESRRPSERRSNYGGPRDGNYRGGRRGEETGEGGERHKRVYDRHSGSGRGNDIKRDGSGSGNWGSPTEVAPDTVEPN AENEANATFEKKPKEEDADDANKDIAKDEEKEEEKEMTLVEWEKFRAEQGKTSVVLKTTEQRKVDAKEFASMQQISSKKENDEIFAKLGSDKDKKKEAAD KEEKARKAVSINEFLKPAEGESYRGGRGRGGRGGRGGGRGAGGFGGGGYNRDVSAPSIEDPGQFPSLGGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10040157 [exp]	0	1
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10000599 [exp]	1.0	0.8188
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	7.5	0.7609
AT4G05400			copper ion binding (.1.2)		Lus10027072 [exp]	10.7	0.7390
AT1G80860		ATPLMT	ARABIDOPSIS PHOSPHOLIPID N-MET...		Lus10026087 [exp]	10.7	0.7201
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Lus10020931 [exp]	11.4	0.7001
AT3G63390			unknown protein		Lus10024829 [exp]	12.7	0.7090
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	12.8	0.7307
AT3G05560			Ribosomal L22e protein family ...		Lus10026555 [exp]	17.7	0.7113
AT4G17520			Hyaluronan / mRNA binding fami...		Lus10004362 [exp]	18.8	0.6954
AT4G36420			Ribosomal protein L12 family p...		Lus10041783 [exp]	19.3	0.6787

Compare expression of checked genes

Lus10040157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.