Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16820 543 / 0 PLA-I{beta]2 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) AT2G44810 309 / 2e-101 DAD1 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) AT1G30370 258 / 2e-79 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 241 / 6e-73 alpha/beta-Hydrolases superfamily protein (.1) AT2G30550 228 / 7e-69 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G06800 220 / 4e-66 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT4G18550 195 / 1e-56 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 193 / 1e-55 alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 182 / 2e-51 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 179 / 6e-51 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004364 [exp] 969 / 0 AT4G16820 587 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10010997 [exp] 762 / 0 AT4G16820 551 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10000600 [exp] 410 / 2e-142 AT4G16820 304 / 4e-101 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Lus10042914 [exp] 306 / 3e-99 AT2G44810 464 / 1e-163 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10041165 [exp] 278 / 7e-89 AT2G44810 464 / 4e-164 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 252 / 3e-78 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 249 / 5e-77 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 250 / 4e-76 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10023280 [exp] 226 / 6e-67 AT1G30370 537 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153100 [exp] 721 / 0 AT4G16820 575 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.003G081500 [exp] 715 / 0 AT4G16820 558 / 0.0 phospholipase A I beta 2, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047700 [exp] 305 / 1e-98 AT2G44810 491 / 9e-174 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G047900 [exp] 282 / 8e-90 AT2G44810 557 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G137900 [exp] 277 / 5e-88 AT2G44810 543 / 0.0 DEFECTIVE ANTHER DEHISCENCE 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 258 / 2e-79 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.001G263200 [exp] 253 / 1e-77 AT1G30370 607 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 247 / 1e-75 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 234 / 1e-70 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G044700 [exp] 229 / 2e-68 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10040158 pacid=23174079 polypeptide=Lus10040158 locus=Lus10040158.g ID=Lus10040158.BGIv1.0 annot-version=v1.0 ATGCAGATCGGTCTCGGATCCGCAGCCCCGGCGCAAAACCTCCACCTCTTCCAGGCTAAACGCGCCGGCAGCAGCTTCAAGTACAGCCAATCTCCCCTCA ATCCCGTCATTTCTTGCTCTTCTTCTTCTTCGTCAACTATTCCCAGCCACCTTGCCAATCTCGACAAGCTTCTCCAGAAGCAGCCTACTCCGGAGCTCAA TTCAAGATCCAACCGCATCGAATCAATTCCTAATGTACCCAAACCTAAAAAGGCGGCTTCGTCGACTAACAGGGGAAGTTATTTACTCGAGGGGCTTAAT CTGGCCAGGATATGGCCGGAGATGAAGGCGACCGAGGAGATGTCACCAAGGCATCTCAACCGATTGCAGCGGCTGCTTTCCAAGACGGCGGAGTATTCTC CCAGGAACAGTTTAGCTTCCCGGTGGAGGGAGTACCACGGCTGCAACGATTGGAAAGGCATGTTAGATCCCCTGGACGAGAATCTCCGGCGGGAGGTGGT TAGGTACGGGGAGTTCGTTCAGGCGGCGTATCACGCCTTCCATTCAGATCCGGAATTTTCAGCCGAGGATGCCTCCCTCACAAGACAGGTGGCGCTCTCC GACAGGACTTTCAAGGTCACCAAAAGCCTTTACGCCACCTCATCGGTCGGCTTGCCAAAGTGGGTCGACGAAGTGGCTCCGGATCTCGGGTGGATGACCC AGCGGACAAGCTGGGTCGGGTACGTCGCGGTTTGCGATGACAAGAGGGAGATCCAGCGGATGGGGAGGAGAGACATCGTCATCGCATTACGTGGCACTTC CACGTGTTTAGAATGGGCCGAAAACATGAGAGCCCAATTAGTTTCAATGTCCGATGAATCCAAATCAGCCCAAAATAATCCTAAGGTCGAATGTGGGTTC CTAAGCCTGTACAAAACAAAAGGAGCCCTCGTTCACAGCCTGGCCCAGTCCGTCGTCGACGAGGTAAAGAGACTAATGGAACAATACAAAGGCGAAACCT TAAGCATAACGGTGACCGGACACAGCCTAGGAGCGGCTCTGTCTTTGCTCGTCGCCGACGAGCTGAGCACGTGCTCCCCAGACATGCCACCCGTCGCAGT TTTTTCGTTCGGCGGGCCGCGTGTAGGGAATCGAGCATTCGGGAGACGGTTGAACAACAAGAAAGTAAAAGTTTTGCGGGTAGTAAATAACCAAGACTTG ATCACTAAAGTTCCAGGGTTGCCGATGGTGGAGGACGAGAATCACCCATTGGCGTACTCACACGTGGGGACCGAGTTAAGGGTGGACACGAGGATGTCCC CATACTTGAAGCCGAATGCAGACGTGGCGTGCTGCCATGACCTGGAGGCTTACCTACACCTTGTGGATGGGTTCTTGGCGTCAAACTGTCCGTTTAGGTC AAATGCGAAGAGGAGTTTAGTGAAGTTGTTGAATGAGCAAAAGTCGAATGTAAAACAATTGTATACGAGAAAGGCGCAAGCCTTGACGTTGAAATTTGAA AGGCAGCAAGGAGGGTTTGGCTCAGCTACCGGCTGTTTGCCTAGTCCTTCTTCTTCGACCTAG
AA sequence Show only first row Show all	>Lus10040158 pacid=23174079 polypeptide=Lus10040158 locus=Lus10040158.g ID=Lus10040158.BGIv1.0 annot-version=v1.0 MQIGLGSAAPAQNLHLFQAKRAGSSFKYSQSPLNPVISCSSSSSSTIPSHLANLDKLLQKQPTPELNSRSNRIESIPNVPKPKKAASSTNRGSYLLEGLN LARIWPEMKATEEMSPRHLNRLQRLLSKTAEYSPRNSLASRWREYHGCNDWKGMLDPLDENLRREVVRYGEFVQAAYHAFHSDPEFSAEDASLTRQVALS DRTFKVTKSLYATSSVGLPKWVDEVAPDLGWMTQRTSWVGYVAVCDDKREIQRMGRRDIVIALRGTSTCLEWAENMRAQLVSMSDESKSAQNNPKVECGF LSLYKTKGALVHSLAQSVVDEVKRLMEQYKGETLSITVTGHSLGAALSLLVADELSTCSPDMPPVAVFSFGGPRVGNRAFGRRLNNKKVKVLRVVNNQDL ITKVPGLPMVEDENHPLAYSHVGTELRVDTRMSPYLKPNADVACCHDLEAYLHLVDGFLASNCPFRSNAKRSLVKLLNEQKSNVKQLYTRKAQALTLKFE RQQGGFGSATGCLPSPSSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10040158 [exp]	0	1
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10004364 [exp]	1.7	0.9380
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	3.5	0.9138
AT3G61490			Pectin lyase-like superfamily ...		Lus10028766 [exp]	5.7	0.8651
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	9.9	0.8887
AT1G18740			Protein of unknown function (D...		Lus10018883 [exp]	10.4	0.8922
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10038781 [exp]	16.3	0.9051
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	17.0	0.8929
AT4G14740			Plant protein of unknown funct...		Lus10041187 [exp]	18.1	0.8961
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	21.6	0.8851
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030453 [exp]	28.5	0.8466

Compare expression of checked genes

Lus10040158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.