Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 259 / 1e-76 RLK1 receptor-like protein kinase 1 (.1) AT4G21380 155 / 2e-39 ARK3 receptor kinase 3 (.1) AT1G11280 150 / 6e-38 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G21390 147 / 1e-36 B120 S-locus lectin protein kinase family protein (.1) AT4G00340 142 / 4e-35 RLK4 receptor-like protein kinase 4 (.1) AT1G61360 137 / 1e-33 S-locus lectin protein kinase family protein (.1.2) AT1G61380 137 / 2e-33 SD1-29 S-domain-1 29 (.1) AT1G11300 137 / 2e-33 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G65800 136 / 3e-33 ARK2 receptor kinase 2 (.1) AT4G11900 135 / 4e-33 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004365 [exp] 1057 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 654 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 352 / 1e-110 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 343 / 2e-107 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 342 / 4e-107 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 340 / 2e-106 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 222 / 2e-62 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 221 / 4e-62 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10024343 [exp] 208 / 5e-57 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G153800 [exp] 614 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G212000 [exp] 429 / 2e-140 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 424 / 1e-138 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 407 / 3e-132 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 407 / 6e-132 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014600 [exp] 387 / 2e-124 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 386 / 4e-124 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G228200 [exp] 374 / 3e-119 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 358 / 5e-113 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 353 / 1e-111 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10040160 pacid=23174228 polypeptide=Lus10040160 locus=Lus10040160.g ID=Lus10040160.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCTTCTTCTCTACTTGTTCTACTTTCCTTCATCTGGTTTTTTATCCTCAACCCTCATTTCTCCACTGCAAATGTCACTTTGAGTTCATCAC TAACAGCTGATCCGAACTTCAACTCCGTATGGGATTCACCTTCAGGAGACTTCGCTTTCGGATTCAGCCAACTCAAGATAAACTCAGACCTCTTCTTGCT AGCCATCTGGTTCAACAAGATCCCCACCAGAACTATTGTCTGGTTCGCCAATGGCGACAACCCAGTTCCCAAAGGATCGAAAGTCGAGCTCACCTCCAGC AGCCTCGCATTAACCGATCCTGGAGGCCAACTAGTGTGGGAAGCAAGATCAACTGGTACTACTGGTACCAGTACCATATCATATGCTGCCTTATTGGATA CTGGCAACCTTGTACTTGTAAGAAATACTACTTCTGAATTCCTCTGGCAAAGTTTTAGCAATCCTACTGATACCTTACTGCCAAACCAAACGTTGAACTT GGGAACCAGTATGTTCGCTAAGCGAACCGAAACAAATTACACAAAGGGAAGGTTTGCTCTTAGATTCTCCAATGGAAGTCTTGACCTTGTCCCCGTAGCT TGGCCGGGAGGTTCTTTCTATAACCGTTACTACACCAGTGGTACTTATAGCTCGAATCCTTCCGAGGCAGGCAACCGTCTGGTTTTCAATGCATCAGCAC AGGTTTATATAGTGAAAGGGAATGGAGATATTGCTCAGCTTCTTACTTGGGACTTTGTGACTTACAGACAGGATTCATACTATACAGTAACATTGGGATT TGATGGTCTTTTCACACAATACTCTCATCCAAAGAATTTCAATGCTGCGTTTTTCCATACGCTTAGTGGCGGTCCTTGTGGATACAATAGCTTCTGTGCA TATCAGGACTCAAACCCTACTTGCAGCTGTCGTCCGGGATACGTGATTGCGAATTCTGAAGATCCATTGGATGGATGCATACCGACTTACCCTCAGGGAT GTGGATTAGGTGACGATGATTCGAAGGATCCAAAGGAGATTTATGAGTTCAGGAAGGTCAGTGGGGTGGATTTCCCTTTGAATGACTATGAAAGGCTGCA ACTTGACAGTGAATCACTGTGTGAAGACTCTTTCTTGAATGACTGTGCATGTGATGTTGCAGTGTTTGATGGACTTAGGTGTTGGAAAAAGAGGCTTCCA CCCTCCAATGGAAGAACTTGGAACAATACCTTGATAAGGCTTATGTTCAAAGTAAGAAAGGGAGATAATGTTCATACTTCTTCAGGGTTTCCTAATCAAC TTGGGAAGAGGAAAACTACACCGGTTGCGTTGAAGGCATCTCTGGGAAGTTCTATAGCCCTTAATGGGGTACTGGTTTTGTTTGCTTCTTTGGTTTTGTT AAGAATCAAAAAGAGGAAAATGGAAATCGGTAGAGATTTCCATGACTTGGGGAGCACGGTACTGGAGACGAGTATGCGTTCCTTCAGCTACAAAGAAGTG GAAGCAGCAACAGATGGATTCAAAGAAGAGCTAGGGAGAGGCTCTTTCAGGATTGTGTACAAAGGCGTAATGAAACCTGGCAATGTAGCAATTGCAGTGA AGCTGGACAAGCTGGCTCAAGAGAGGGAGAAGGAGTTCAAGACTGAGGTGAATGCAATCGGCAGAACACATCACAAGAACCTAGTGAGGCTGCATGGATA CTGCGACGAATCCTCCCACCGCCTTTTGATCTACGAGCTCATGAGAAATGGCAGCCTGTCCAACTGTCCAACTTCTTGTTCACCCTTCCAAGGCCAAACT GGCACCACAGGGTCAGCATCGCGATGGGGATCACGAGAGGTCTCGTATACTTACACGAGGAATGCCCCGTACCAATCATCCATTGTGACATCAAGCCTCA CAACATACTCCTTGACCATTCATTGA
AA sequence Show only first row Show all	>Lus10040160 pacid=23174228 polypeptide=Lus10040160 locus=Lus10040160.g ID=Lus10040160.BGIv1.0 annot-version=v1.0 MASSSSLLVLLSFIWFFILNPHFSTANVTLSSSLTADPNFNSVWDSPSGDFAFGFSQLKINSDLFLLAIWFNKIPTRTIVWFANGDNPVPKGSKVELTSS SLALTDPGGQLVWEARSTGTTGTSTISYAALLDTGNLVLVRNTTSEFLWQSFSNPTDTLLPNQTLNLGTSMFAKRTETNYTKGRFALRFSNGSLDLVPVA WPGGSFYNRYYTSGTYSSNPSEAGNRLVFNASAQVYIVKGNGDIAQLLTWDFVTYRQDSYYTVTLGFDGLFTQYSHPKNFNAAFFHTLSGGPCGYNSFCA YQDSNPTCSCRPGYVIANSEDPLDGCIPTYPQGCGLGDDDSKDPKEIYEFRKVSGVDFPLNDYERLQLDSESLCEDSFLNDCACDVAVFDGLRCWKKRLP PSNGRTWNNTLIRLMFKVRKGDNVHTSSGFPNQLGKRKTTPVALKASLGSSIALNGVLVLFASLVLLRIKKRKMEIGRDFHDLGSTVLETSMRSFSYKEV EAATDGFKEELGRGSFRIVYKGVMKPGNVAIAVKLDKLAQEREKEFKTEVNAIGRTHHKNLVRLHGYCDESSHRLLIYELMRNGSLSNCPTSCSPFQGQT GTTGSASRWGSREVSYTYTRNAPYQSSIVTSSLTTYSLTIH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10040160 [exp]	0	1
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10013532 [exp]	8.5	0.8234
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	10.4	0.8148
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Lus10005464 [exp]	15.2	0.7982
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	18.8	0.8122
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Lus10024271 [exp]	19.1	0.8075
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10011805 [exp]	27.9	0.8003
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	28.6	0.8090
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	31.1	0.8058
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	35.3	0.7941
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	36.8	0.8013

Compare expression of checked genes

Lus10040160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.