Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02090 243 / 3e-81 ATCSN7, COP15, CSN7II, FUS5 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004367 [exp] 400 / 9e-143 AT1G02090 265 / 1e-89 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10028205 [exp] 235 / 9e-78 AT1G02090 355 / 2e-125 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Lus10042908 [exp] 221 / 1e-71 AT1G02090 385 / 7e-136 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137400 [exp] 251 / 5e-84 AT1G02090 381 / 6e-135 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.014G047200 [exp] 241 / 5e-80 AT1G02090 394 / 5e-140 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.003G081066 [exp] 167 / 2e-52 AT1G02090 179 / 1e-57 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3) Potri.001G153900 [exp] 81 / 4e-19 AT1G02090 87 / 1e-21 FUSCA 5, CONSTITUTIVE PHOTOMORPHOGENIC 15, ARABIDOPSIS THALIANA COP9 SIGNALOSOME SUBUNIT 7, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2), Proteasome component (PCI) domain protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10040162 pacid=23173990 polypeptide=Lus10040162 locus=Lus10040162.g ID=Lus10040162.BGIv1.0 annot-version=v1.0 ATGGAAATTGAGCAGCGACAAGCTCCATTCATCGAGAAGTTCGTGGAGCAAGCCTCCGCCGTCGTCGACGGTCCTGCTCTCACGCGAATCGTCGTGGAAT CCACCTCTCACCCTTCGGTTTTTGCCTTCTCCGATATTTTGTCCGTCCCCAGTTTCGACAAGCTTCAAGGAACCGCGGATTCGGCATTCGTCTATCTTCT TAAACTATTCGCGTATGGCACATGGCGGGACTACAAAGCTAAATCTAGCGAACAGCCACAGCTGACGCCGAATCAAATCATCAAACTGAAGCAACTTACA GTGCTTACTCTTGCTGAGGGAACCAAGGTTATGTCCTATGATACGCTTTTGGAGGAACTTGAATTCTCTAACATCCGTGAACTTGAAGATTTCCTTATTG ATGAGTGTGTGTATGCGGGCATAATCAAAGGGAAGGTGAATCAATTAAGGAGATGCTTTGAGGTTAAATTTGCAGCCGCAAGGGACCTGATGCCTTGTGA ATTTGATTCTGTGACAGAGACAACAAGAAATTGGCTGGAAACTTCAGGTAATATGCTAGCCCTTCTTGAAAAGCAGATTGACAAGGCTAATGCGATGGAG GAATTGGAAACGAAGCATGGAATGCCAACTCGAAGCGGGGACGCAATGTTTCCAGAAGGTGAAGGGTGTTGTTACAGAGGCTCTCGTCCTCCTGCAATTC GTTTCTTGGATGAGTTCTTTTGA
AA sequence Show only first row Show all	>Lus10040162 pacid=23173990 polypeptide=Lus10040162 locus=Lus10040162.g ID=Lus10040162.BGIv1.0 annot-version=v1.0 MEIEQRQAPFIEKFVEQASAVVDGPALTRIVVESTSHPSVFAFSDILSVPSFDKLQGTADSAFVYLLKLFAYGTWRDYKAKSSEQPQLTPNQIIKLKQLT VLTLAEGTKVMSYDTLLEELEFSNIRELEDFLIDECVYAGIIKGKVNQLRRCFEVKFAAARDLMPCEFDSVTETTRNWLETSGNMLALLEKQIDKANAME ELETKHGMPTRSGDAMFPEGEGCCYRGSRPPAIRFLDEFF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02090		ATCSN7, COP15, ...	FUSCA 5, CONSTITUTIVE PHOTOMOR...		Lus10040162 [exp]	0	1
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10024928 [exp]	13.0	0.7491
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006819 [exp]	17.9	0.6327
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10000295 [exp]	18.7	0.6676
					Lus10024691 [exp]	20.7	0.6894
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	22.0	0.6952
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10007651 [exp]	28.6	0.6828
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10019650 [exp]	31.2	0.6196
AT5G10530			Concanavalin A-like lectin pro...		Lus10007077 [exp]	35.3	0.6884
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	37.7	0.6831
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10031960 [exp]	39.4	0.6828

Compare expression of checked genes

Lus10040162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.