Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004371 [exp] 47 / 3e-06 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10040169 [exp] 44 / 1e-05 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040168 pacid=23174153 polypeptide=Lus10040168 locus=Lus10040168.g ID=Lus10040168.BGIv1.0 annot-version=v1.0 ATGATTCATACTAACACTGAATACTGTGTTGATTCGACTGCTATCGAAACATCAAGATTACTGCATAACCCTGATGCTTTTGCCTCTCGGCTCCTTTCCT GTCTTTCCCATTGGAGAACCAAGATTTTGTTCTTTTTGTGTACGCCGGAACCATTATCCACCCAGATGAGTGTAGATGACTATGAGATTCAAGCTGCTAG GTGTACCGATTTGGCCATCACCTCGATAGCCATGAGATTGTTCCTGATACTTGTTTTAGCTTTCCTATTTTCAAGAGGGAGTTCTCCTTGTTTAATGTGT GCTTCAGTGATCAATTACTTCAATTCCATCTTCAGTACATTCAATGGTACAACAAGAACAGAGTTGCTCTGTGGTGAAATGGCTATGGAAGACATTATCT CAAGGCTCAAGCTGATGGATGCATGGTTGAAAGAATTCCAGTGGGCAACTTTGCCAAGGCTTAGCTCCAACTTTGTATCTCCATGA
AA sequence Show only first row Show all	>Lus10040168 pacid=23174153 polypeptide=Lus10040168 locus=Lus10040168.g ID=Lus10040168.BGIv1.0 annot-version=v1.0 MIHTNTEYCVDSTAIETSRLLHNPDAFASRLLSCLSHWRTKILFFLCTPEPLSTQMSVDDYEIQAARCTDLAITSIAMRLFLILVLAFLFSRGSSPCLMC ASVINYFNSIFSTFNGTTRTELLCGEMAMEDIISRLKLMDAWLKEFQWATLPRLSSNFVSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040168 [exp]	0	1
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008996 [exp]	3.9	0.8649
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10042192 [exp]	4.9	0.8431
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008999 [exp]	6.5	0.8369
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10016122 [exp]	8.7	0.8199
AT5G18020			SAUR-like auxin-responsive pro...		Lus10039020 [exp]	9.2	0.8211
AT5G66440			unknown protein		Lus10024273 [exp]	10.0	0.6957
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10010061 [exp]	13.0	0.8116
AT1G23965			unknown protein		Lus10030641 [exp]	17.0	0.7966
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	17.3	0.7913
AT4G38840			SAUR-like auxin-responsive pro...		Lus10008995 [exp]	17.9	0.7857

Compare expression of checked genes

Lus10040168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.