Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47240 381 / 9e-132 ATNUDT8 nudix hydrolase homolog 8 (.1) AT4G25434 241 / 3e-78 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47650 239 / 2e-77 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT2G04430 217 / 2e-68 ATNUDT5 nudix hydrolase homolog 5 (.1) AT4G12720 210 / 5e-66 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT2G04450 192 / 7e-59 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT2G04440 112 / 4e-29 MutT/nudix family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004371 [exp] 592 / 0 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10012319 [exp] 246 / 6e-80 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 238 / 2e-76 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10039079 [exp] 224 / 1e-70 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 221 / 2e-70 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10038780 [exp] 222 / 1e-69 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012320 [exp] 219 / 1e-69 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10040168 [exp] 45 / 2e-05 ND / Lus10021278 [exp] 44 / 8e-05 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154300 [exp] 418 / 2e-146 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.003G080400 [exp] 410 / 3e-143 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 321 / 2e-108 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1) Potri.001G368000 [exp] 268 / 3e-88 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 243 / 3e-78 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 243 / 4e-78 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 233 / 1e-74 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 234 / 2e-74 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 232 / 2e-74 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 230 / 3e-73 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10040169 pacid=23173854 polypeptide=Lus10040169 locus=Lus10040169.g ID=Lus10040169.BGIv1.0 annot-version=v1.0 ATGGAGTTGATGAAGCCGTCAAAATCACTAGTTTCTTCTTCTTCTTCTTCCTCCATCTTCTCAAGCATTCCACATTCTTCTCGACGATTCCACCTTAGAT TCGCCAGTTTCAAAGGGTTGGTTGCGAAAGTATCATGTAATCTTCCCACGAGTTCGGTCAGCAGTTCAGCTGCTGGGAGTGGTAAATTTGTGCCTGCCCA AAGTTACTGTTTTGGTGATGCTTGGAGTCATCTATTGAAGAAGACTAGTGTGGAAGTTCTGGAAGCTTTTGACGATGAGTATGGAGGGATTATAGTGGAT CCACACAGATTGCCACATAACTCTGATGCTTTTGCCTCCATGCTTCGTTCCTCTCTTTCCCATTGGAAAACCAAGGGGAAGAAGGGGATTTGGTTGAAGT TACCTTTGGAAAGGTCTCAGCTTGTTCCAATTGCTGTACAGGAGGGTTTCGAGTACCACCATGCTGAACCAGGATACGTGATGCTAACATACTGGATTCC TGAACAACCTTGCATGCTTCCTTCTAATGCTTCTCATCATGTTGGAGTTGGAGGGTTCGTCGTAAATGAGAACAATGAGATTCTTGTAGTGCAGGAGAAG TTCTGTACCCCATCCTTCTCTGGAGTTTGGAAAATACCAACCGGTTTCATTCACGAGGCAGAGGAAATTTACTCTGGAGCAGTAAGAGAGGTCAAAGAGG AAACTGGGATCGACACCGAGTTCGTGGAAGTGATGGCATTCAGGCATGCTCATAACTTGGCATTTCAGAAATCAGACTTGTTGTTTGTGTGTATGCTGGA ACCATTGTCAACACAGATCAGTATAGATGACTATGAGATTCAAGCAGCCAGGTGGATGCCTCTAGGAGATTTTCTGGAGCAGCCACTTATCAATGGAGAC GGAATGTTCAAGAAGATCCTAGACATATGTATCGCTCGATTAGGGAAGCGTTACTGTGGACTATCGGCACATCAAGTTGTTTCCAAGTTTGACGACAGGC AATCCTGCCTCTACTACAATGTCATCGACGCTAAGAATGGAAATAATGGCAACTGCATAGGTTATTGA
AA sequence Show only first row Show all	>Lus10040169 pacid=23173854 polypeptide=Lus10040169 locus=Lus10040169.g ID=Lus10040169.BGIv1.0 annot-version=v1.0 MELMKPSKSLVSSSSSSSIFSSIPHSSRRFHLRFASFKGLVAKVSCNLPTSSVSSSAAGSGKFVPAQSYCFGDAWSHLLKKTSVEVLEAFDDEYGGIIVD PHRLPHNSDAFASMLRSSLSHWKTKGKKGIWLKLPLERSQLVPIAVQEGFEYHHAEPGYVMLTYWIPEQPCMLPSNASHHVGVGGFVVNENNEILVVQEK FCTPSFSGVWKIPTGFIHEAEEIYSGAVREVKEETGIDTEFVEVMAFRHAHNLAFQKSDLLFVCMLEPLSTQISIDDYEIQAARWMPLGDFLEQPLINGD GMFKKILDICIARLGKRYCGLSAHQVVSKFDDRQSCLYYNVIDAKNGNNGNCIGY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10040169 [exp]	0	1
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10009229 [exp]	2.0	0.9240
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	4.5	0.9159
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Lus10004371 [exp]	5.0	0.8704
AT1G07280			Tetratricopeptide repeat (TPR)...		Lus10001206 [exp]	6.0	0.9175
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	6.0	0.9113
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	6.3	0.9252
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033720 [exp]	6.3	0.9071
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10015442 [exp]	7.1	0.9068
AT2G04700			ferredoxin thioredoxin reducta...		Lus10039468 [exp]	8.3	0.9180
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	11.0	0.8873

Compare expression of checked genes

Lus10040169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.