Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17486 283 / 8e-98 PPPDE putative thiol peptidase family protein (.1.2) AT5G47310 280 / 3e-96 PPPDE putative thiol peptidase family protein (.1) AT1G47740 223 / 4e-73 PPPDE putative thiol peptidase family protein (.1.2) AT2G25190 211 / 5e-69 PPPDE putative thiol peptidase family protein (.1) AT5G25170 208 / 5e-68 PPPDE putative thiol peptidase family protein (.1) AT1G80690 206 / 3e-67 PPPDE putative thiol peptidase family protein (.1) AT4G31980 201 / 1e-60 unknown protein AT4G25680 81 / 3e-18 PPPDE putative thiol peptidase family protein (.1) AT4G25660 81 / 4e-18 PPPDE putative thiol peptidase family protein (.1) AT3G07090 67 / 4e-13 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004755 [exp] 370 / 6e-132 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10007844 [exp] 355 / 6e-126 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10004372 [exp] 327 / 1e-110 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1) Lus10043293 [exp] 243 / 3e-81 AT4G17486 243 / 3e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10013657 [exp] 241 / 6e-81 AT4G17486 243 / 1e-81 PPPDE putative thiol peptidase family protein (.1.2) Lus10019437 [exp] 241 / 1e-80 AT4G17486 241 / 1e-80 PPPDE putative thiol peptidase family protein (.1.2) Lus10033030 [exp] 231 / 2e-76 AT4G17486 225 / 3e-74 PPPDE putative thiol peptidase family protein (.1.2) Lus10032708 [exp] 223 / 2e-73 AT1G47740 357 / 1e-125 PPPDE putative thiol peptidase family protein (.1.2) Lus10003951 [exp] 221 / 6e-73 AT1G47740 358 / 8e-126 PPPDE putative thiol peptidase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154400 [exp] 318 / 3e-111 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 317 / 5e-111 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.018G070600 [exp] 229 / 2e-76 AT4G17486 235 / 1e-78 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G154400 [exp] 225 / 8e-75 AT4G17486 220 / 8e-73 PPPDE putative thiol peptidase family protein (.1.2) Potri.002G134200 [exp] 223 / 8e-74 AT1G47740 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1.2) Potri.014G042300 [exp] 221 / 5e-73 AT1G47740 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1.2) Potri.T126004 [exp] 217 / 2e-71 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 216 / 6e-71 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.006G261500 [exp] 216 / 7e-71 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.004G151200 [exp] 214 / 6e-70 AT1G47740 335 / 1e-116 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10040170 pacid=23174012 polypeptide=Lus10040170 locus=Lus10040170.g ID=Lus10040170.BGIv1.0 annot-version=v1.0 ATGCATTTCTTTCCTTTCAGCTCAAGTTCTCGCAATGAAGGGAGGAATCGTGTTCCGGTATATCTGAATGTGTACGATCTCACCTCTGTAAATAACTACC TCTATTGGTTCGGCCTCGGCATTTTCCATTCCGGCGTTGAAGTCCACGGGATGGAGTTTAGTTTTGGAGCACATGAGTACCCTAGCAGTGGGATATTTGA GGTGGAACCACGAAGTTGTCCAGGGTTCATCTTTCGACGAGCAGTGTATCTGGGAAAAACCAGCATGTCACGTGCAGAAGTTCAGTTGTTGATGGAGCAT ATTTCTACAGACTATCACGGTGATTGTTATCATCTGATTGCCAAAAATTGCAATCACTTCACAAATGATGCTTGCGTGAAACTAACAGGGAAGACTATCC CCGGATGGGTAAATCGGATGGCTAGGTTAGGTTCATTCTGCAATTGTCTGCTGCCAGAAAGTATTAAGATAGCATCGGTTCGACGTCTCCCCGAACATGC AGCACTTTCTGATGACGATGAGTCAGGATCGATCATGTCGTTGGCTTCATTGGCAAGTGACGAGGAGAATTCAAATCACCACCTGCTACCCATACCCAAC GGCGAGGTTTCATTTATAAAGGAGAAACCTATCAGGCTAGCTAAAGAACTGCTATAG
AA sequence Show only first row Show all	>Lus10040170 pacid=23174012 polypeptide=Lus10040170 locus=Lus10040170.g ID=Lus10040170.BGIv1.0 annot-version=v1.0 MHFFPFSSSSRNEGRNRVPVYLNVYDLTSVNNYLYWFGLGIFHSGVEVHGMEFSFGAHEYPSSGIFEVEPRSCPGFIFRRAVYLGKTSMSRAEVQLLMEH ISTDYHGDCYHLIAKNCNHFTNDACVKLTGKTIPGWVNRMARLGSFCNCLLPESIKIASVRRLPEHAALSDDDESGSIMSLASLASDEENSNHHLLPIPN GEVSFIKEKPIRLAKELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17486			PPPDE putative thiol peptidase...		Lus10040170 [exp]	0	1
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Lus10015514 [exp]	21.5	0.9063
AT3G10915			Reticulon family protein (.1.2...		Lus10029041 [exp]	23.4	0.9061
AT5G49525			unknown protein		Lus10017078 [exp]	28.0	0.9055
AT4G31830			unknown protein		Lus10010682 [exp]	42.5	0.8940
AT4G18220			Drug/metabolite transporter su...		Lus10043396 [exp]	42.7	0.8967
AT3G26890			unknown protein		Lus10031999 [exp]	47.7	0.8923
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10040280 [exp]	55.0	0.8952
					Lus10043397 [exp]	85.1	0.8907
AT2G32070			Polynucleotidyl transferase, r...		Lus10018330 [exp]	87.5	0.8852
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	88.7	0.8845

Compare expression of checked genes

Lus10040170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.