Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36730 456 / 5e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 291 / 1e-93 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 279 / 2e-88 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 276 / 6e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G33760 273 / 1e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 271 / 7e-84 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 259 / 6e-82 MEF21 mitochondrial editing factor 21 (.1) AT5G56310 256 / 9e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08305 256 / 2e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31920 252 / 2e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004373 [exp] 513 / 0 AT2G36730 355 / 1e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 283 / 4e-89 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 277 / 3e-88 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004544 [exp] 273 / 5e-87 AT4G21065 461 / 2e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10037229 [exp] 271 / 2e-86 AT1G59720 719 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025490 [exp] 273 / 4e-86 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002024 [exp] 268 / 7e-86 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 274 / 1e-85 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005207 [exp] 270 / 2e-84 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G083900 [exp] 516 / 0 AT2G36730 552 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 292 / 1e-93 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G252400 [exp] 287 / 4e-93 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G034900 [exp] 283 / 3e-91 AT4G21065 370 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G103600 [exp] 282 / 1e-89 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 275 / 6e-88 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G052300 [exp] 273 / 1e-86 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G043400 [exp] 271 / 5e-86 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 275 / 6e-86 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 272 / 7e-86 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040171 pacid=23174215 polypeptide=Lus10040171 locus=Lus10040171.g ID=Lus10040171.BGIv1.0 annot-version=v1.0 ATGCGAAGAGAAGGGATTGGCCCCAATAAGCTTACTTTCCCTTTTGTCTTGAATTCCTGCGCTTCCTGTTTGGCTCTTAAGGAAGGGAAGCAGGTCCATG GCGACTTTATGAAGTCTGGGTTGGACACTGATGTGTACATTTGCAATAATTTGATCCATTTTTATGGCTCCTGCAAGAAGGTCTCTTATGCACGCAAGGT GTTCGATGAAATGTCTGAAAGGACTGTTGTGTCGTGGAATGCTGTCATTACTTGCTGTGTTGGGTGTTCGCTTGCAGCTGATGCGATTCTGTACTTTGAC CAAATGAGGGGTTCAGGATTTGAACCGGACGAGGCGACCATGGTGGTCATGCTTTTGCTTTCGGCCGAAGTAGGCAACTTAGGGTTAGGGAAATGGATTC ATTCACAAGTGTTTAAAGGGAAATTGGATTTGAATTACAAGTTGGGCACAGCCATTGTTGATATGTACGCAAAGAGTGGGAATGTAGGATATGCAATGTC GGTTTTCGGAAGCATGAAGAAGAGAAATGTGTGGACTTGGAGTGCTATGATTTTGGGGCTGGCTCAACACGGGTTTGCAAACGAAGGGCTCAAACTATTT CATCAGATGATCGAGACCTCTTCTATCCGCCCTAATTACGTGACCTTCCTCGGAGTCCTTTGCGCTTGTAGCCATGCTGGTCTGGTAGAGGACGGGTTTC GGTACTTCCACGAAATGCAGCACCGGTACGGGATCAAACCAACGGTGGTGCACTACGGTGCAATGGTCGATATACTTGCTCGTGCAGGCCACCTGAAGGA AGCTTGCGACTTTTTAACACATTCGCCTCACCGGAACGACCCGGCAGTGTTAAGAACATTGTTAGGAGCTTGCAGCAACCGCGGCAAGAATGACGATGAT GGAGTTGCAGATAAGGTAAGGAAGCGCTTGCTGGAAGTGGAACCGAGGAGAAGTGGGAACCTTGTTATGGTTGCAAACATGTATGCCGATGCAGGGATGT GGCAGCGAGTTGTAGATGTAAGAAAGGTTATGAGGGATAGCGGTCTGAAGACAAGAGGTGGCGAGAGTTGTCTTGAATTAGATGGCTCGATTCATCGGTT CTTCTCTGGATAA
AA sequence Show only first row Show all	>Lus10040171 pacid=23174215 polypeptide=Lus10040171 locus=Lus10040171.g ID=Lus10040171.BGIv1.0 annot-version=v1.0 MRREGIGPNKLTFPFVLNSCASCLALKEGKQVHGDFMKSGLDTDVYICNNLIHFYGSCKKVSYARKVFDEMSERTVVSWNAVITCCVGCSLAADAILYFD QMRGSGFEPDEATMVVMLLLSAEVGNLGLGKWIHSQVFKGKLDLNYKLGTAIVDMYAKSGNVGYAMSVFGSMKKRNVWTWSAMILGLAQHGFANEGLKLF HQMIETSSIRPNYVTFLGVLCACSHAGLVEDGFRYFHEMQHRYGIKPTVVHYGAMVDILARAGHLKEACDFLTHSPHRNDPAVLRTLLGACSNRGKNDDD GVADKVRKRLLEVEPRRSGNLVMVANMYADAGMWQRVVDVRKVMRDSGLKTRGGESCLELDGSIHRFFSG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10040171 [exp]	0	1
AT5G38050			RNA polymerase II transcriptio...		Lus10009106 [exp]	1.4	0.7750
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	10.9	0.7159
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10000597 [exp]	14.8	0.6325
AT4G18905			Transducin/WD40 repeat-like su...		Lus10004536 [exp]	15.2	0.6760
AT5G41620			unknown protein		Lus10003027 [exp]	17.7	0.6692
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10014257 [exp]	22.6	0.6599
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	31.6	0.6633
AT4G04614			unknown protein		Lus10006902 [exp]	41.8	0.6692
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10027447 [exp]	56.6	0.6292
AT4G10620			P-loop containing nucleoside t...		Lus10000122 [exp]	56.7	0.6081

Compare expression of checked genes

Lus10040171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.