Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60340 408 / 2e-143 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G47330 375 / 4e-131 alpha/beta-Hydrolases superfamily protein (.1) AT4G17483 348 / 3e-120 alpha/beta-Hydrolases superfamily protein (.1) AT5G47340 340 / 6e-117 alpha/beta-Hydrolases superfamily protein (.1) AT4G17480 333 / 1e-114 alpha/beta-Hydrolases superfamily protein (.1) AT4G17470 331 / 9e-114 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT5G47350 300 / 4e-101 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004375 [exp] 610 / 0 AT3G60340 411 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042902 [exp] 387 / 6e-135 AT3G60340 442 / 2e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028200 [exp] 385 / 4e-134 AT3G60340 439 / 3e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004757 [exp] 315 / 5e-103 AT5G47330 337 / 3e-111 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154600 [exp] 449 / 2e-159 AT3G60340 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G080100 [exp] 446 / 2e-157 AT3G60340 434 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G137200 [exp] 397 / 2e-139 AT3G60340 462 / 2e-164 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02089 [flax] [poplar] Palm_thioest Palmitoyl protein thioesterase
Representative CDS sequence Show only first row Show all	>Lus10040173 pacid=23173970 polypeptide=Lus10040173 locus=Lus10040173.g ID=Lus10040173.BGIv1.0 annot-version=v1.0 ATGACTACTCCTCACTTCCCACTTGTTCTTCTCATCACCCTTTTCCTACTCTACCCATCTGCTCATTCCTCCTTACCCTTCATTGTACTCCATGGTATTT CAGATGGATGCAATAGTCAAGGAGTGAAACGGTTCACTGAGCTACTTACTTACTTCTCTGGTTCTTCTGGACAATGCCTAGAAGTTGGGAATGGAGTTTG GGACTCGTGGTTTATGACTCTTGAGGAACAGACTGATATTATCTGTGAAAAGGTGAAGACAATGGAAGAACTGAGGAACGGATACAACTTGGTTGGTCTT TCCCAGGGAAACCTGATTGGTAGAGGGGTATTAGAGTTCTGTGATGGCGCACCTCCAGTTAAGAATTTTATTTCACTAGCTGGACCTCATGCTGGCACTG CTTCTGTGCCTCTTTGTGGTGACGGAATCTTTTGCATTCTAGCAGCCAAGCTGATTAAGTCAGAGATATATAGTGATTTCATCCAGGAACACCTGGCTCC AAGTGGTTACCTCAAATTGCCTAATGCTATCCCTAACTACATGGAGAAATGCAAGTTTCTTCCGAAGCTCAACAACGAACTCCCTGACGAGAGGAATTCA ACATACAAGGAAAGGTTCCGCAGCCTCGAGAATTTGGTGCTCATCATGTTCGACAATGACAATGTCGTGATTCCGAGAGAAACCTCATGGTTCGGTTACT ACCCAGATGGAGAATTCGAGCCAGTTTTGCGCCCACAAGAGACTAAGTTGTACATCGAGGACTGGATCGGCCTGAGGAAGCTCGACGAGGAAGGAAGAGT ATGGTTTGTGAATGTTTCAGGAGGGCATCTTGGAATCTCAGAGAGTGACATGAATACGTTTATCGTGCCTTACCTGGTCGACAATCAACAGCCAGAAGTC ATACACTTGAAGAAGCATACTTCACAATTCACTAGGAAACTGATCTACTCAAATTAG
AA sequence Show only first row Show all	>Lus10040173 pacid=23173970 polypeptide=Lus10040173 locus=Lus10040173.g ID=Lus10040173.BGIv1.0 annot-version=v1.0 MTTPHFPLVLLITLFLLYPSAHSSLPFIVLHGISDGCNSQGVKRFTELLTYFSGSSGQCLEVGNGVWDSWFMTLEEQTDIICEKVKTMEELRNGYNLVGL SQGNLIGRGVLEFCDGAPPVKNFISLAGPHAGTASVPLCGDGIFCILAAKLIKSEIYSDFIQEHLAPSGYLKLPNAIPNYMEKCKFLPKLNNELPDERNS TYKERFRSLENLVLIMFDNDNVVIPRETSWFGYYPDGEFEPVLRPQETKLYIEDWIGLRKLDEEGRVWFVNVSGGHLGISESDMNTFIVPYLVDNQQPEV IHLKKHTSQFTRKLIYSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10040173 [exp]	0	1
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10001612 [exp]	1.4	0.9223
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10007065 [exp]	6.3	0.9239
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	18.0	0.9128
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10002706 [exp]	19.7	0.9106
AT3G60510			ATP-dependent caseinolytic (Cl...		Lus10028182 [exp]	23.5	0.9036
AT3G54380		AtSAC3C	yeast Sac3 homolog C, SAC3/GAN...		Lus10041609 [exp]	24.2	0.9010
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	27.7	0.9090
AT2G23790			Protein of unknown function (D...		Lus10000580 [exp]	27.7	0.8967
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10020436 [exp]	28.4	0.9091
AT2G27770			Plant protein of unknown funct...		Lus10014372 [exp]	28.7	0.9090

Compare expression of checked genes

Lus10040173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.