Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35680 369 / 5e-128 Phosphotyrosine protein phosphatases superfamily protein (.1) AT5G56610 259 / 1e-86 Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT3G23610 48 / 2e-06 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G10940 43 / 0.0001 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004376 [exp] 633 / 0 AT2G35680 367 / 3e-127 Phosphotyrosine protein phosphatases superfamily protein (.1) Lus10012928 [exp] 291 / 8e-98 AT5G56610 294 / 5e-99 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10034998 [exp] 237 / 3e-77 AT5G56610 247 / 1e-82 Phosphotyrosine protein phosphatases superfamily protein (.1.2) Lus10021940 [exp] 52 / 8e-08 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 44 / 2e-05 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10034214 [exp] 45 / 5e-05 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10029052 [exp] 44 / 7e-05 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G080000 [exp] 426 / 3e-150 AT2G35680 385 / 3e-134 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.001G154700 [exp] 421 / 1e-148 AT2G35680 379 / 1e-131 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.014G045500 [exp] 360 / 7e-125 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.002G136700 [exp] 347 / 1e-119 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.010G033000 [exp] 46 / 9e-06 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.008G020500 [exp] 44 / 9e-05 ND / Potri.010G238700 [exp] 40 / 0.001 ND / Potri.019G048600 [exp] 40 / 0.001 AT3G10940 417 / 2e-148 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10040174 pacid=23173885 polypeptide=Lus10040174 locus=Lus10040174.g ID=Lus10040174.BGIv1.0 annot-version=v1.0 ATGAGAATTGAAGAAGCGAACGTGGAAGCTGGTAAGTTGGGTGTGGATACTGGTGTTGAGGAAGATAGGTTGGTTGTTTGGGATGCGAAGCGGGTGTTGA TCGGAGCAGGCGCAAGGGCTCTGTTTTATCCGACTTTGGCTTACAACGTGGTTAGAAACAAGTGTCAGGCTGAGTTCCGCTGGTGGGATAGGGTGGACAA GTATATATTGTTAGGTGCTGTTCCGTTCCCTGGTGATGTTCCTCATCTTAAGGAGCTTGGTGTTTGTGGAGTTGTTACAATGACCGAGCCTTATGAAACA TTGGTTCCCACAACTCTGTATCATGAACATGGGATTGACCACCTGGTACTCCCTACAAGGGACTATTGTTTTGCTCCTTCATTGAGAGACATATACCGGG CTGTTGAATTTATCCATGTCAATGCGTTACAAGGGAGGACAACCTATGTCCACTGCAAGGCTGGTCGAGGACGCAGCACTACAATTGTCTTATGCTACCT TGTACAACACAAGCATATGACACCCCAGGCTGCCTATGATTATGTAAAGTCGATTAGACCAAGGGTGCTTCTGGCATCTCCACAGCTGAAGGCTGTTGAA GAATTCTATCTTCTGAAGGTGAAAACTCACAGCGTGTACAAGAATTTGAAGAGTCTTTTTCTGAAGACCCCCAGACAGCAAGGTGTAGAGCTGTTCGGTT CGAAGGATCTCTTGGCATTTGATGATGGCTCTGTTGTAGTTGTGACGGAATCTGATCTAGATGGATATGATCCAAGGCTCGTGTCTAGTTCCCCGAAGGG TGATATTTGGGCCGACTTGAGCGTGGTTTATGGGGTACGTGTCGCTGGGCAGGCCGTCCTGGCTAGAATCTCTTGCCTGTGGCTCCACAACCAGAAGTTT GCAGGGAAGCAACTAAACAGGAAGAGTAGCTGCTCGATCACGGATCAATTGGGAGGTATGAACGTAGACATTCACGTCTACTAA
AA sequence Show only first row Show all	>Lus10040174 pacid=23173885 polypeptide=Lus10040174 locus=Lus10040174.g ID=Lus10040174.BGIv1.0 annot-version=v1.0 MRIEEANVEAGKLGVDTGVEEDRLVVWDAKRVLIGAGARALFYPTLAYNVVRNKCQAEFRWWDRVDKYILLGAVPFPGDVPHLKELGVCGVVTMTEPYET LVPTTLYHEHGIDHLVLPTRDYCFAPSLRDIYRAVEFIHVNALQGRTTYVHCKAGRGRSTTIVLCYLVQHKHMTPQAAYDYVKSIRPRVLLASPQLKAVE EFYLLKVKTHSVYKNLKSLFLKTPRQQGVELFGSKDLLAFDDGSVVVVTESDLDGYDPRLVSSSPKGDIWADLSVVYGVRVAGQAVLARISCLWLHNQKF AGKQLNRKSSCSITDQLGGMNVDIHVY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	0	1
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10042229 [exp]	1.0	0.9589
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	2.0	0.9514
AT3G53490			unknown protein		Lus10003989 [exp]	2.4	0.9352
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	2.8	0.9253
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	2.8	0.9352
AT4G13630			Protein of unknown function, D...		Lus10011854 [exp]	3.0	0.9227
AT4G36195			Serine carboxypeptidase S28 fa...		Lus10028365 [exp]	3.5	0.9282
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	3.5	0.9120
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Lus10043381 [exp]	3.7	0.9276
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020322 [exp]	3.9	0.9320

Compare expression of checked genes

Lus10040174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.