Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16780 265 / 6e-88 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT3G60390 245 / 1e-79 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT5G47370 229 / 3e-74 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT4G17460 221 / 8e-71 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT2G44910 218 / 4e-69 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT5G06710 210 / 6e-66 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G37790 202 / 1e-63 HD HAT22 Homeobox-leucine zipper protein family (.1) AT2G22800 194 / 2e-60 HD HAT9 Homeobox-leucine zipper protein family (.1) AT2G01430 153 / 2e-44 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 135 / 2e-38 HD ATHB18 homeobox-leucine zipper protein 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004377 [exp] 376 / 4e-131 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10007849 [exp] 273 / 1e-90 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004759 [exp] 272 / 5e-90 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10021064 [exp] 209 / 2e-66 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10016254 [exp] 206 / 1e-63 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10004161 [exp] 205 / 1e-63 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 203 / 8e-63 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10019256 [exp] 142 / 6e-41 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10011569 [exp] 140 / 6e-40 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079800 [exp] 279 / 3e-93 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.001G155100 [exp] 275 / 1e-91 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.014G045100 [exp] 254 / 2e-83 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.002G136400 [exp] 246 / 2e-80 AT3G60390 285 / 5e-96 homeobox-leucine zipper protein 3 (.1) Potri.016G058600 [exp] 208 / 7e-67 AT5G06710 239 / 9e-79 homeobox from Arabidopsis thaliana (.1.2) Potri.016G059000 [exp] 208 / 7e-65 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.005G147100 [exp] 205 / 2e-64 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.007G008200 [exp] 203 / 5e-64 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.006G193700 [exp] 204 / 8e-64 AT5G06710 251 / 1e-81 homeobox from Arabidopsis thaliana (.1.2) Potri.001G229700 [exp] 202 / 2e-62 AT5G06710 269 / 4e-88 homeobox from Arabidopsis thaliana (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain CL0123 [flax] [poplar] PF04618 [flax] [poplar] HD-ZIP_N HD-ZIP protein N terminus
Representative CDS sequence Show only first row Show all	>Lus10040175 pacid=23174195 polypeptide=Lus10040175 locus=Lus10040175.g ID=Lus10040175.BGIv1.0 annot-version=v1.0 ATGGCTGGCAAACAGGATTTGAGGCTCAGCTTGAGCTTGGCTACTACTGCTAGCTTCCCTGTTCACCACAACTCTAATTTGCAGCTCAACCTCCACAAAC CACCACCACCTCCTTCTTCCTGGGCTGACACCGATCTCATCCCCAATCCTTCCTCTGGTCCGATTTCGGAACCCACGAGATCTTTCCTCCGGGGAATCGA CGTCAACCGCCCCCCCCCCCCCGCCACCGACGACTGCGGGGACGATGCTGGTGTTTCTTCACCCAACAGTACCATTTCAAGCGTCAGCGGTAATAAGAGA AGCGAGAGGGACGAACCACTCGGATCTTCCGATCCTGATGCGGATCCGGCTTCCTCCGGCCGCGCAGGCGCCGGTAACAGTGACGACGAAGACGGCGATA CCTCCCGCAAGAAGCTCCGCCTCTCCAAAGGCCAGGCCGCCGTGCTTGAGGACAGCTTCAAAGAACACCACACTCTCAACCCGAAGCAAAAATCTGCATT GGCTAAGCAGCTAGGACTGAGGCCTAGACAAGTGGAGGTGTGGTTTCAGAACAGACGGGCTAGGACAAAGTTGAAGCAAACGGAGGTTGACTGTGAGTTT TTAAAGCGATGCTGCGAGAATCTGACGGAGGAGAACAGGCGGTTGCAAAAAGAAGTGCAGGAGCTAAGAGCACTGAAGCTTTCCCCGCAGTTCTACATGC ATATGACCCCACCAACCACGCTGACCATGTGCCCTTCATGTGAGCGTGTCGGGGTCCCACCTTCCACTTCATCATCTTCCGCACCCATGTCAGCACAACA ACCACCGTTGGCTGCCCACCCCAGCTTCATGGGCTGGGCCCACCAGCATCGGCCCATGACTCATGTAAACCCATGGGCTGCTGTTGCTGCGGCGGCGGCG GCGGCGTCTTCAACCGCTCACGCACCGCTGAATCTGCTCCGTCCTCGATCGTGA
AA sequence Show only first row Show all	>Lus10040175 pacid=23174195 polypeptide=Lus10040175 locus=Lus10040175.g ID=Lus10040175.BGIv1.0 annot-version=v1.0 MAGKQDLRLSLSLATTASFPVHHNSNLQLNLHKPPPPPSSWADTDLIPNPSSGPISEPTRSFLRGIDVNRPPPPATDDCGDDAGVSSPNSTISSVSGNKR SERDEPLGSSDPDADPASSGRAGAGNSDDEDGDTSRKKLRLSKGQAAVLEDSFKEHHTLNPKQKSALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEF LKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVGVPPSTSSSSAPMSAQQPPLAAHPSFMGWAHQHRPMTHVNPWAAVAAAAA AASSTAHAPLNLLRPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	0	1
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004377 [exp]	1.0	0.9458
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041197 [exp]	3.2	0.9392
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	3.9	0.9353
AT1G70820			phosphoglucomutase, putative /...		Lus10015835 [exp]	4.0	0.9273
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10041634 [exp]	4.9	0.9350
AT3G19550			unknown protein		Lus10013900 [exp]	5.0	0.9349
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	7.9	0.9294
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10003794 [exp]	9.3	0.8711
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10042394 [exp]	9.5	0.9195
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	10.0	0.9120

Compare expression of checked genes

Lus10040175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.