Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17440 43 / 7e-05 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) AT3G60410 42 / 0.0002 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004378 [exp] 127 / 6e-35 AT4G17440 96 / 4e-23 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2) Lus10010984 [exp] 62 / 2e-11 AT3G60410 89 / 3e-20 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Lus10038942 [exp] 37 / 0.0007 AT1G25370 72 / 7e-17 Protein of unknown function (DUF1639) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G044800 [exp] 44 / 5e-05 AT3G60410 105 / 6e-26 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.002G136200 [exp] 42 / 0.0001 AT3G60410 109 / 6e-28 Protein of unknown function (DUF1639) (.1), Protein of unknown function (DUF1639) (.2), Protein of unknown function (DUF1639) (.3) Potri.012G055200 [exp] 42 / 0.0001 AT3G18295 109 / 3e-29 Protein of unknown function (DUF1639) (.1) Potri.008G122600 [exp] 41 / 0.0003 AT1G25370 100 / 6e-25 Protein of unknown function (DUF1639) (.1) Potri.010G122700 [exp] 40 / 0.0007 AT1G25370 110 / 1e-28 Protein of unknown function (DUF1639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07797 [flax] [poplar] DUF1639 Protein of unknown function (DUF1639)
Representative CDS sequence Show only first row Show all	>Lus10040176 pacid=23174126 polypeptide=Lus10040176 locus=Lus10040176.g ID=Lus10040176.BGIv1.0 annot-version=v1.0 ATGGCAACGGCGCCGGTGAACCCGCACCCGCTCCACAACTTCACCGTCTCTCTCAAATGGGGTCAGACCGTCAAGCTTGCCTCAGCAAACTCTCACAGGC ACAACAATCGCGGTGGAGGCGGTGGAAGTAATAGCAATCATGCTGATCGTCCTGCTCATCCTCACTTGTCTGAATCGGATGCGGAGTCCGATCGCGAATT TTTCGCAGGTAATACCCCACCTCCTCCTGCTACTGCTAATACTACCGTCGTTCATCGGGTGGGATCCCGCTCCACCCGCCAGCAGCGGTCCTCGTTCACC GCTTGCTCATCCGTCTTCCACCAACGGGGTCCCGAGGAAGAGCTGCGGAAAGAAGCTGCGATTACGGAAGTTAAAGCGGAAGAGGAGGAGGAAGAAGGAG AAGATGAGATTGAAGAGGATATCTTCATCATGACCGGGTCAAGACCCTCACGACGGCCCAAAAAACGTGCCAAGAACGTCCAGAAATTGCTTGATAACGT CTTCCCTGGTCTGTGGCTGGTGGGCAATACGGTTGATTCTTACAGAATTGCTGAGACCCCGATGATGGTCCGTCACAGTTATCCCTGCTACTTTATGTGT TCATCAACCGTTCAATTCTATTTCTTCGTTTCCTCTTTGCTATTTGCTGCGTGTTCTTGA
AA sequence Show only first row Show all	>Lus10040176 pacid=23174126 polypeptide=Lus10040176 locus=Lus10040176.g ID=Lus10040176.BGIv1.0 annot-version=v1.0 MATAPVNPHPLHNFTVSLKWGQTVKLASANSHRHNNRGGGGGSNSNHADRPAHPHLSESDAESDREFFAGNTPPPPATANTTVVHRVGSRSTRQQRSSFT ACSSVFHQRGPEEELRKEAAITEVKAEEEEEEGEDEIEEDIFIMTGSRPSRRPKKRAKNVQKLLDNVFPGLWLVGNTVDSYRIAETPMMVRHSYPCYFMC SSTVQFYFFVSSLLFAACS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60410			Protein of unknown function (D...		Lus10040176 [exp]	0	1
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	13.3	0.7947
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	15.3	0.7894
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10021385 [exp]	17.3	0.7920
AT4G29850			Eukaryotic protein of unknown ...		Lus10016385 [exp]	19.3	0.7817
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	24.9	0.7779
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10034702 [exp]	34.3	0.7649
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Lus10042655 [exp]	36.9	0.7352
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10040912 [exp]	40.7	0.7725
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	41.4	0.7699
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	51.0	0.7412

Compare expression of checked genes

Lus10040176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.