Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37980 481 / 2e-171 Zinc-binding dehydrogenase family protein (.1) AT1G26320 479 / 9e-171 Zinc-binding dehydrogenase family protein (.1.2) AT3G03080 478 / 3e-170 Zinc-binding dehydrogenase family protein (.1) AT5G37940 476 / 1e-169 Zinc-binding dehydrogenase family protein (.1) AT5G16970 474 / 9e-169 AT-AER alkenal reductase (.1) AT5G16990 471 / 1e-167 Zinc-binding dehydrogenase family protein (.1) AT5G17000 469 / 4e-167 Zinc-binding dehydrogenase family protein (.1) AT5G38000 464 / 6e-165 Zinc-binding dehydrogenase family protein (.1) AT5G16960 459 / 4e-163 Zinc-binding dehydrogenase family protein (.1) AT3G59845 414 / 5e-145 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004380 [exp] 686 / 0 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 538 / 0 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 538 / 0 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 531 / 0 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 518 / 0 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 513 / 0 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 441 / 7e-156 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 369 / 7e-126 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 335 / 3e-115 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143700 [exp] 503 / 2e-180 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G143800 [exp] 496 / 1e-177 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 486 / 8e-174 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 479 / 2e-170 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G006000 [exp] 478 / 2e-170 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.007G143600 [exp] 474 / 5e-169 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002700 [exp] 474 / 9e-169 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005400 [exp] 474 / 1e-168 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 473 / 2e-168 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002950 [exp] 434 / 3e-153 AT5G16970 464 / 7e-165 alkenal reductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040177 pacid=23173950 polypeptide=Lus10040177 locus=Lus10040177.g ID=Lus10040177.BGIv1.0 annot-version=v1.0 ATGGCGGATGAGGAAGTACAGCAGAACAAGCAGGTGGTGCTGAAGGAATACGCCACCGGTTTCCCTAAAGAATCGCAATTCGGTGTCACAACCGTCTCGA TTCCCCGCAAAGTTCCACATGGTTCCAATTCCGTTCTGTTCAAGAACCTCTACCTCTCTTGCGATCCTTACATGCGCGGCCGGATGACTCCCGTTTCTCA CGGCGACGCTGAAGATCCCCAGTTCAGTTCCTTCATTCTCGGCTCCCCAATATCAGGACTTGGGGTGAAGAAGGTGGTGGATTCAGCACACCCTGATTAC AAGATTGGTGATTTGGTTTGGGGAGGGATTACTTGGGAAGAGTATAGCATCGTTGAGAACCCTACTGGTCTGTTCAAGATTCCTGATGCAGATGTGCCAC TTTCCTACTACACTGGCATTCTTGGTATGCCTGGTATGACTGCTTACTTCGGATTTTATGATGTTTGCACTCCGAAGAAAGGAGAGTACGTATTTGTTTC AGCAGCATCTGGTGCTGTCGGTCAGCTGGTTGGTCAATTCGCTAAATTGGCGGGCTGCTACGTTGTTGGAAGTGCTGGCAGCAAAGAAAAGGTTGAATTA CTGAAGAACAAGTTTGGTTTTGACGAGGCATTCAACTACAAAGAAGTGGATGACTTAGACGCAGCTCTGAAGAGGTACTTCCCTGAAGGCATCGACATCT ACTTTGAGAACGTGGGTGGTAAAACACTGGACGCAGTTCTCCTAAACATGAGAGTCCATGGCCGAATCGCAGCATGTGGGATGATATCCCAGTATAATCT GGTGGTGCCCGAAGGCGTTCACAACCTGATGACGATTGTATACAAGCGGGTTCGAATCCAAGGCTTCGTGGTGACTGATTACTTCGGTAGGTACGGTGAG TTCATAGGCAAGATGTTGCCTTACATCAAGGAAGGTAAAGTTGTGTATGTGGAAGACGTTGCACAAGGACTGGAGAATGGACCATCTGCACTGCTGGGGC TCTTCAGTGGGCGCAATGTTGGGAAGCAAGTGGTGGCTATGGCTCGTGACTGA
AA sequence Show only first row Show all	>Lus10040177 pacid=23173950 polypeptide=Lus10040177 locus=Lus10040177.g ID=Lus10040177.BGIv1.0 annot-version=v1.0 MADEEVQQNKQVVLKEYATGFPKESQFGVTTVSIPRKVPHGSNSVLFKNLYLSCDPYMRGRMTPVSHGDAEDPQFSSFILGSPISGLGVKKVVDSAHPDY KIGDLVWGGITWEEYSIVENPTGLFKIPDADVPLSYYTGILGMPGMTAYFGFYDVCTPKKGEYVFVSAASGAVGQLVGQFAKLAGCYVVGSAGSKEKVEL LKNKFGFDEAFNYKEVDDLDAALKRYFPEGIDIYFENVGGKTLDAVLLNMRVHGRIAACGMISQYNLVVPEGVHNLMTIVYKRVRIQGFVVTDYFGRYGE FIGKMLPYIKEGKVVYVEDVAQGLENGPSALLGLFSGRNVGKQVVAMARD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	0	1
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	1.4	0.9083
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	1.4	0.9264
AT2G46420			Plant protein 1589 of unknown ...		Lus10030264 [exp]	3.0	0.9078
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	3.2	0.8979
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	6.5	0.8903
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	6.5	0.8878
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008741 [exp]	8.0	0.8734
AT5G60750			CAAX amino terminal protease f...		Lus10017536 [exp]	12.2	0.8529
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10027879 [exp]	12.6	0.8703
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10025673 [exp]	13.2	0.8628

Compare expression of checked genes

Lus10040177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.