Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53990 437 / 9e-151 UDP-Glycosyltransferase superfamily protein (.1) AT5G54010 436 / 2e-150 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 431 / 1e-148 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 427 / 7e-147 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 423 / 3e-145 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 422 / 2e-144 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT2G22930 419 / 8e-144 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 416 / 1e-142 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 408 / 1e-139 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G29630 391 / 8e-133 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004381 [exp] 900 / 0 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10013337 [exp] 534 / 0 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10039237 [exp] 450 / 1e-157 AT5G54010 240 / 5e-76 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 440 / 1e-151 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 305 / 8e-99 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 200 / 2e-58 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 195 / 2e-56 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 192 / 1e-55 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 176 / 2e-49 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G097900 [exp] 446 / 4e-154 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G061000 [exp] 377 / 5e-127 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 324 / 4e-107 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 310 / 6e-101 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 216 / 2e-64 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 204 / 4e-60 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 202 / 3e-59 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 188 / 1e-53 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 186 / 3e-53 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 182 / 6e-52 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10040178 pacid=23173812 polypeptide=Lus10040178 locus=Lus10040178.g ID=Lus10040178.BGIv1.0 annot-version=v1.0 ATGCCGAAGATGGCAACCACTGGCGGCGAATCAAACAATCAGCTGAACGTGGCCATGTTCCCACTCTTCGCAATGGGACACATCACCCCTTTCCTCCACC TAGCCAACCAACTCGCCGCCCGAGGCCACCGCATCTCTTTCTTGCTCCCTACTCGCACCATCCCCAAGGTAACCAACCTCATCAACTCCCACGCGGATCT CGTCACCTTCCACCCAATCACAGTCCCCCACGTGGCAGGCCTCCCTCAGGGTGCCGAGCTAATCGCCGACGTCCCTCCTCATCTCGCCGCCCACATCTTC GCCGCCATGGACGCCACCGAGGACCAGTTCACGTCCGCCCTCCGCCGCGTCAATCCCGACATCGTCATCTTTGACGCTGCGCCGTGGGTCTCACGCGCCG CCCGCGAGCTGGGATGCGTCCCTGTGTCGTACGGGACCTCATCAGCGGTCTGGGCAGCGATGCGAATTGTTCCGTCGGCGAGGATCGTGAAGGAGATGAC GGACGAAGAGCTGGGCAGGACGCCGCCTGGGTACCCGTCTTCTGCGGTGGTCCCCAGGCGCGACGAGATCGCCGGGGCTAGGTTGTTCGCCATGGAATTC GGACCCAGCTCGCTTTACGAACGAATAGTGTCTGTGATCCAGGGGAGTGAAGCCATAGCAATGAGGAGTTGCCGGGAGCTTGAAGGCAAGTACTTGGACT ACTTGGGGGAGCAGCACGGGAAACGGGTGTTGTTGACTGGGCCGGTTTTGCCGAAGCCAGATGGGCTGGGCTTGGACGAGAATTTGGGCTCTTGGCTCTC CAAATTCGAGCCCGGTTCAGTTGTGTACTGCGCGTTCGGGAGTGAAGTCGTTCTCCACAAGGACCAATTCCAGGAGCTGCTCAGGGGACTGGAGCAATGC GGGCGACCATTTCTGACGGCGCTGAAGCCGCCACACGGCTGCAAGACAGTGGAAGAAGCGTTACCGGAAGGTTTCAAGGAGAGGGTAATCATCAAAGATG GGAGAGGAATGGTGCACGAGGGATGGGTTCAACAACCGCAAATTCTAGGGCATCGGTCGGTGGGTTGCTTCGTGAGTCATTGCGGGTTCGGTTCGATGTG GGAGGCTCTGTTGAGCGACTGCCAGATACTGTTGGTCCCCAACATAAGCGAACAGATACTGTGTACGATGTTCATGGTGAAGGAGCTGAAAGTGGCCTTG GAAGTTAACAAGGACGAGAATGGGTGGATTAGCAAGGAGGAGGTTTGCAGAGCTGTTGGAGCTGTGATGGATGAAGATAGTGAATTGGGGAAGGAAGTAA GGAGGCATCATTTGAAGTTGAGGGAGGTTTTAGGGGATGATCATCTTCTGGATAAGTATGTTGATGATTTTGTTGCTCAGCTTCGAACTCTGCTTCCTTA TGGAGATGAGATTACCAGACAATGA
AA sequence Show only first row Show all	>Lus10040178 pacid=23173812 polypeptide=Lus10040178 locus=Lus10040178.g ID=Lus10040178.BGIv1.0 annot-version=v1.0 MPKMATTGGESNNQLNVAMFPLFAMGHITPFLHLANQLAARGHRISFLLPTRTIPKVTNLINSHADLVTFHPITVPHVAGLPQGAELIADVPPHLAAHIF AAMDATEDQFTSALRRVNPDIVIFDAAPWVSRAARELGCVPVSYGTSSAVWAAMRIVPSARIVKEMTDEELGRTPPGYPSSAVVPRRDEIAGARLFAMEF GPSSLYERIVSVIQGSEAIAMRSCRELEGKYLDYLGEQHGKRVLLTGPVLPKPDGLGLDENLGSWLSKFEPGSVVYCAFGSEVVLHKDQFQELLRGLEQC GRPFLTALKPPHGCKTVEEALPEGFKERVIIKDGRGMVHEGWVQQPQILGHRSVGCFVSHCGFGSMWEALLSDCQILLVPNISEQILCTMFMVKELKVAL EVNKDENGWISKEEVCRAVGAVMDEDSELGKEVRRHHLKLREVLGDDHLLDKYVDDFVAQLRTLLPYGDEITRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54010			UDP-Glycosyltransferase superf...		Lus10040178 [exp]	0	1
					Lus10039865 [exp]	13.0	0.8886
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024616 [exp]	14.0	0.9099
					Lus10005393 [exp]	19.4	0.9042
AT3G01516			unknown protein		Lus10032143 [exp]	23.0	0.8935
					Lus10005394 [exp]	23.7	0.9033
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	29.8	0.8970
					Lus10032253 [exp]	38.7	0.8926
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	38.8	0.8665
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035235 [exp]	40.1	0.8524
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Lus10002026 [exp]	43.4	0.8791

Compare expression of checked genes

Lus10040178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.