Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33950 517 / 0 ATOST1, P44, SRK2E, SNRK2-6, SnRK2.6, OST1 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) AT5G66880 503 / 3e-180 SNRK2-3, SNRK2.3, SRK2I SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) AT5G63650 498 / 2e-178 SNRK2-5, SNRK2.5, SRK2H SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) AT1G60940 498 / 2e-178 SNRK2-10, SNRK2.10, SRK2B SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) AT1G10940 497 / 7e-178 ASK1, SNRK2-4, SNRK2.4, SRK2A SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) AT5G08590 493 / 3e-176 ASK2, SNRK2-1, SNRK2.1, SRK2G ARABIDOPSIS SKP1-LIKE1, ARABIDOPSIS SERINE/THREONINE KINASE 2, SNF1-related protein kinase 2.1 (.1) AT3G50500 491 / 1e-175 SPK-2-2, SNRK2-2, SNRK2.2, SRK2D SNF1-RELATED PROTEIN KINASE 2-2, SNF1-related protein kinase 2.2 (.1.2) AT1G78290 490 / 2e-175 SRK2C, SNRK2-8, SNRK2 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) AT4G40010 474 / 3e-169 SNRK2-7, SNRK2.7, SRK2F SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNF1-related protein kinase 2.7 (.1) AT2G23030 448 / 4e-159 SNRK2-9, SnRK2.9 SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNF1-related protein kinase 2.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004382 [exp] 701 / 0 AT4G33950 518 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10004748 [exp] 579 / 0 AT4G33950 497 / 5e-178 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10007833 [exp] 573 / 0 AT4G33950 496 / 2e-177 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10020997 [exp] 518 / 0 AT4G33950 637 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10001367 [exp] 507 / 0 AT1G60940 599 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Lus10015464 [exp] 505 / 0 AT1G60940 596 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Lus10027931 [exp] 502 / 3e-179 AT4G33950 603 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10009332 [exp] 500 / 4e-179 AT5G66880 610 / 0.0 SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) Lus10004291 [exp] 500 / 5e-179 AT5G63650 565 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G084100 [exp] 590 / 0 AT4G33950 527 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.004G145500 [exp] 516 / 0 AT4G33950 624 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.002G099700 [exp] 516 / 0 AT1G78290 523 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.004G218200 [exp] 514 / 0 AT1G60940 593 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Potri.007G096400 [exp] 514 / 0 AT4G33950 514 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.005G072600 [exp] 513 / 0 AT1G78290 497 / 4e-178 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.009G106900 [exp] 513 / 0 AT4G33950 600 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.T011001 [exp] 507 / 0 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Potri.T011000 [exp] 507 / 0 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) Potri.003G015400 [exp] 506 / 0 AT1G10940 583 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040179 pacid=23173876 polypeptide=Lus10040179 locus=Lus10040179.g ID=Lus10040179.BGIv1.0 annot-version=v1.0 ATGGAAGAGAGATATGAACTGATAAAAGATCTGGGTGCGGGAAATTTCGGAGTGGCGAAGTTGGTGAGGGATAAGAAGACCAAGGAACTTGTTGCTGTCA AGTACATTGAAAGAGGGACGAAGATTGATGCACATGTCCAGAGAGAAATTATCAACCACAGATCTTTGAGGCATCCAAATATCGTCAGGTTCAAAGAGGT ATGGCTGACGCCAACACATCTGGCAATCGTCATGGAATATGCAGCCGGTGGAGAACTCTTTGCCAGGATATGCAATGCTGGCCGTTTTAGCGAAGACGAG GCTAGGTTTTTCTTCCAGCAGCTAATATCTGGAGTCAGCTACTGCCACTCCATGGAAATCTGTCACAGAGATCTGAAACTTGAAAACACACTTCTAGATG GAAGTCCCGCTCCACGTCTTAAAATATGCGACTTCGGTTACTCAAAGTCTGGTCTATTGCATTCGCAACCGAAATCGACAGTGGGAACTCCAGCTTACAT TGCACCAGAAGTCCTGTCACGGAAGGAATATGATGGGAAGATTGCAGACGTATGGTCGTGTGGAGTGACGCTCTACGTAATGCTGGTTGGAGGTTACCCT TTCGAGGATCCAGACGATCCAAGGAACTTTCGCAAGACCATTGGGAGAATAATGAGTGTCCAGTACACTATCCCGGATTACGTACGTGTCTCAGCAGAAT GCAAGCAGCTCCTTTCACGGATTTTTGTCGCCAATCCTGCAAAGAGGATTACAATCCCGGAGATTAAACAGCTGCCTTGGTTCCTCAAGAACTTGCCCAA GGAGCTGATCGAGATCGAGAAGACAAACTATTGTCAAGCAGAAGGTGATCAGCCATCTCAGAGTGTTGATGAAATAATGCGGATCATCGAAGAGGCTAAG GTTCCTGGTGAAGGGGCCAAATTAGCTGCTCAAGCTTCTGGCGGTGTTGGGACATCAGATGACTTGGGAACCATTTCCATGGAATCTTCTGACCTTAGTG GAGACTTTGTAGCTGGTTTGTAG
AA sequence Show only first row Show all	>Lus10040179 pacid=23173876 polypeptide=Lus10040179 locus=Lus10040179.g ID=Lus10040179.BGIv1.0 annot-version=v1.0 MEERYELIKDLGAGNFGVAKLVRDKKTKELVAVKYIERGTKIDAHVQREIINHRSLRHPNIVRFKEVWLTPTHLAIVMEYAAGGELFARICNAGRFSEDE ARFFFQQLISGVSYCHSMEICHRDLKLENTLLDGSPAPRLKICDFGYSKSGLLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGGYP FEDPDDPRNFRKTIGRIMSVQYTIPDYVRVSAECKQLLSRIFVANPAKRITIPEIKQLPWFLKNLPKELIEIEKTNYCQAEGDQPSQSVDEIMRIIEEAK VPGEGAKLAAQASGGVGTSDDLGTISMESSDLSGDFVAGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10040179 [exp]	0	1
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042317 [exp]	1.0	0.9498
AT3G52105			unknown protein		Lus10016415 [exp]	6.2	0.9375
AT1G49310			unknown protein		Lus10011281 [exp]	6.5	0.9267
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10035929 [exp]	6.9	0.9424
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	10.4	0.9352
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10001491 [exp]	14.3	0.9416
AT4G39830			Cupredoxin superfamily protein...		Lus10016808 [exp]	15.5	0.9364
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	15.9	0.9478
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	16.7	0.9190
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10029207 [exp]	16.9	0.9426

Compare expression of checked genes

Lus10040179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.