Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59390 361 / 8e-127 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004383 [exp] 495 / 9e-180 AT3G59390 366 / 8e-129 unknown protein Lus10007819 [exp] 333 / 5e-115 AT3G59390 301 / 3e-102 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G051300 [exp] 378 / 2e-133 AT3G59390 377 / 5e-133 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10218 [flax] [poplar] DUF2054 Uncharacterized conserved protein (DUF2054)
Representative CDS sequence Show only first row Show all	>Lus10040180 pacid=23174102 polypeptide=Lus10040180 locus=Lus10040180.g ID=Lus10040180.BGIv1.0 annot-version=v1.0 ATGTCTAAACATGGATCGACTGTGCGGTGTCTACTCCTCCAATTGCTGTTTCTCCATCTCCTATCCTCCAGAGTGTCAGCAATAAGGAAAGACATCGGCT TCCGAGATATTCAGATTTGCAGAACCACTGTTCAAGGAAGATACTTGCTATCAGACGAAAACGGCCATGTATGTGATTCTCTATCAATTGATCCCAAATC CCGTTGTTGCCCCATGAAAGGAGAGAGATTCTCCTGCAATGGATGCGACCCTCTCTCACGGTGCTGCAATTCGTATGAATACTGTGTTTCCTGCTGCCTG AACCCTTCCAAGACAAGGGAAAATGAGGTAACGAAGCTTAGAATAGCCAAGGCATCAACTGCAGGGACTTACGGGAGTGTGTTTGATTTCTGCGCTTCTA GGTGTCGCCATAATAGCTGGAGTGTAGTTCATGAGAATGCTTACATCAGTGAGTTCCATCACTGCTTTGCTCTGCCTTCGAATAGATCAGGAAGAGGGGG TGGTGGTGATGCTACACGGCTGGTTGGGGTTAATGTGGTGATTGGTGGGCAAGGGGAGTCTTGTGATTCGGTTTGTAGGTCGAAAGGGCAGTCTTGTATT GGGAATAAGCTTACAGTGCTTAATGATTGCGATATCATGCGACGATACATGAGTTGTAAAGGTGGGTGCTTGGCGAGCATTGGTAGTGACCAGCCGGCTG AAGTGTTTGACGATGCTCCGAAAGATCTGAACCCTGGAGCTTGCTTGTACACGAAGGTGCAATCGATGCTTTCTTGTGATGGTTCTCATCGTCATACCCA AAGACTTTGCCCATGTGCCTAG
AA sequence Show only first row Show all	>Lus10040180 pacid=23174102 polypeptide=Lus10040180 locus=Lus10040180.g ID=Lus10040180.BGIv1.0 annot-version=v1.0 MSKHGSTVRCLLLQLLFLHLLSSRVSAIRKDIGFRDIQICRTTVQGRYLLSDENGHVCDSLSIDPKSRCCPMKGERFSCNGCDPLSRCCNSYEYCVSCCL NPSKTRENEVTKLRIAKASTAGTYGSVFDFCASRCRHNSWSVVHENAYISEFHHCFALPSNRSGRGGGGDATRLVGVNVVIGGQGESCDSVCRSKGQSCI GNKLTVLNDCDIMRRYMSCKGGCLASIGSDQPAEVFDDAPKDLNPGACLYTKVQSMLSCDGSHRHTQRLCPCA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59390			unknown protein		Lus10040180 [exp]	0	1
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10040803 [exp]	4.1	0.8120
AT5G12470			Protein of unknown function (D...		Lus10009956 [exp]	28.2	0.7260
AT5G51700		ATRAR1, RPR2, P...	Required for Mla12 resistance ...		Lus10031688 [exp]	31.3	0.7449
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10035105 [exp]	44.0	0.7062
AT2G07180			Protein kinase superfamily pro...		Lus10027589 [exp]	60.0	0.6526
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10034902 [exp]	62.7	0.6432
AT4G31080			Protein of unknown function (D...		Lus10020370 [exp]	108.9	0.6565
AT3G53390			Transducin/WD40 repeat-like su...		Lus10026500 [exp]	122.2	0.6613
AT1G57680			unknown protein		Lus10028891 [exp]	141.9	0.6382
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	162.7	0.6479

Compare expression of checked genes

Lus10040180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.