Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16760 1025 / 0 ATACX1, ACX1 acyl-CoA oxidase 1 (.1.2) AT2G35690 981 / 0 ACX5 acyl-CoA oxidase 5 (.1) AT5G65110 280 / 3e-84 ATACX2, ACX2 acyl-CoA oxidase 2 (.1.2) AT1G06290 232 / 2e-66 ATACX3, ACX3 acyl-CoA oxidase 3 (.1) AT1G06310 215 / 2e-60 ACX6 acyl-CoA oxidase 6 (.1) AT3G51840 56 / 4e-08 ATG6, ATSCX, ACX4 acyl-CoA oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004386 [exp] 1223 / 0 AT4G16760 1107 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10004745 [exp] 1144 / 0 AT4G16760 1112 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10007815 [exp] 1125 / 0 AT4G16760 1019 / 0.0 acyl-CoA oxidase 1 (.1.2) Lus10041711 [exp] 273 / 2e-81 AT5G65110 1199 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10016249 [exp] 231 / 7e-66 AT1G06290 965 / 0.0 acyl-CoA oxidase 3 (.1) Lus10039894 [exp] 222 / 9e-63 AT1G06290 1036 / 0.0 acyl-CoA oxidase 3 (.1) Lus10024038 [exp] 210 / 1e-58 AT5G65110 1122 / 0.0 acyl-CoA oxidase 2 (.1.2) Lus10002177 [exp] 187 / 2e-51 AT1G06290 754 / 0.0 acyl-CoA oxidase 3 (.1) Lus10027811 [exp] 59 / 1e-08 AT3G51840 741 / 0.0 acyl-CoA oxidase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G079200 [exp] 1105 / 0 AT4G16760 1143 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.001G155500 [exp] 1084 / 0 AT4G16760 1152 / 0.0 acyl-CoA oxidase 1 (.1.2) Potri.007G090400 [exp] 278 / 3e-83 AT5G65110 1203 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.005G077600 [exp] 273 / 2e-81 AT5G65110 1179 / 0.0 acyl-CoA oxidase 2 (.1.2) Potri.019G092600 [exp] 231 / 4e-66 AT1G06290 1070 / 0.0 acyl-CoA oxidase 3 (.1) Potri.013G123500 [exp] 230 / 8e-66 AT1G06290 1061 / 0.0 acyl-CoA oxidase 3 (.1) Potri.016G118000 [exp] 66 / 6e-11 AT3G51840 750 / 0.0 acyl-CoA oxidase 4 (.1) Potri.006G101800 [exp] 60 / 4e-09 AT3G51840 751 / 0.0 acyl-CoA oxidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0087 [flax] [poplar] Acyl-CoA_dh PF01756 [flax] [poplar] ACOX Acyl-CoA oxidase CL0087 [flax] [poplar] PF02770 [flax] [poplar] Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain
Representative CDS sequence Show only first row Show all	>Lus10040183 pacid=23173946 polypeptide=Lus10040183 locus=Lus10040183.g ID=Lus10040183.BGIv1.0 annot-version=v1.0 ATGGAGACCGACGGCGGCGTTGATCACTTAGCCGACGAGAGGAACAAAGCCCAGTTCGACGTTGATGAAATGAAGGTCGTCTGGGCCGGTTCCCCCCACG ACTACGTGCGACTCGACAGGGCCGCCCGAGGGGGCGCGTGTGGCGATGAAATTGGGCTTTTAGTGATCATCATTTCTTATTTAATTTTAAACCCATTGAT TTTTAGTTCTTTCTCGTCGTTGCTTCCAACTGGGGATATTGTTTTGTCAACTTTGTGTAGTTACTTGGCTTTTACATGTTTAAGATTCGGCGTTTATGAA TTTCAGGCGTTTCGGAAGGATAACAGGGTTATGCTGAGTAGGAAGGAATTATTTAAGAATACTCTGAGAAAGGCCACCTATGCTTGGAAACGAATCATTG AGCTCCGTCTTTCAGAGGAAGAGGCGACTAAGTTAAGGTTATATGTGGATGAAGCAGCGTTCACAGATCTTCACTGGGGGATGTTCGTACCGGCTATTAA AGGGCAAGGGACAGATGAGCAGCAGAAGAAATGGTTGCCTTTGGCATATCGTATGCAAATAATTGGCTGTTATGCACAAACTGAACTAGGTCATGGTTCT AATGTCCAAGGCCTTGAAACCACCGCAACATTTGATCCCAAGACTGATGAATTTGTTATCCACAGTCCCACCTTGACTTCTAGCAAATGGTGGCCTGGTG GACTGGGAAAAGTGTCAACCCATGCTGTTGTTTATGCACGTCTCGTTACTGATGGTCAAGAACATGGAGTTCATGGGTATATCGTCCAGCTCCGCAGCTT GGATGATCACATGCCTCTCCCTGGAATAACCATTGGTGATATCGGCATGAAATTTGGGAATGGTGCCTATAACACCATGGACAATGGTGTTTTGCGTTTT GATCAGGTGCGCATCCCGAGGGATCAACTGTTAATGAGGGTACTGCAAGTTACAAGGGAAGGGAAATGTGTGGAGTCCAATGTTCCCCGGCAGTTGATTT ATGGTACCATGGTTTACGTGCGACAAAAGATTGTGGCAGATGCTTCTCGTGCTTTATCACGAGCAGTTTGTATTGCAACAAGATACAGTGCTGTCCGCAG GCAATTTGGTTCTCAAAATGGTGTTGAGACACAGGTGATTGATTATAAGACTCAACAAAATAGACTCTTCCCTTTGCTTGCTTCTGCATACGCTTTCAGA TTCGTTGGGGAATGGTTAAAATTGCTCTATACGGATGTCACTCAAACATTGCAAGCTAGTGACTTCTCTACTTTGCCTGAGGTTCATGCTTGCACTGCTG GTTTGAAGTCTCTGACTACTTCTGCCACTGCTGATGGTATTGAAGAATGCAGGAAACTGTGTGGCGGCCATGGTTACCTTTGCAGCAGCGGCCTTCCTGA ACTATTTGCTGTCTATGTTCCTGCATGTACATATGAAGGAGACAACGTTGTGCTGCTCTTGCAGGTGGCGAGATTTCTGATGAAGACTGTTGCTCAGTTG CCTTCTGGAAAGAAGCCTCTTGGAACAACGTCTTATCTAGGACGCGTAGAACATCTTATGCAGTATCGCTGTGGCATTGAAAAGGCTGAGCATTGGATAG ACCCTTCTGTGATACTCGAAGTCTTTGAAGCCAGGGCCGCTAGGATGTGTGTTAACCGTGCTCAAAAGCTCGACAGTTTTGCGAACCCCGAAGAGGGTTT TGCAGAACTTTCAGCGTTTCTGGCTGAGGCTGCTGTTGCTCATTGCCAATTGATTGTGGTCTCCAAGTTCATTGAGAAATTGCAACAAGATATACCAGGA GAAGGGGTGAAACAGCAGTTGAAGAACTTGTGCAACATATATGCATTGAACCTGATTAACAGACACTTGGGGGATTTCCTCTCCACTGGTACCATTACCA CAAAGCAAGCTTCCCTTGCAAATGATCAGCTTAGATCATTATTCTCTCAGGTTCGTCCCAACGCAATTGCGCTGGTGGATGCATTTAACTACTCGGATCA CTACCTGGGATCGGTACTGGGGCGTTACGATGGAGATGTATACCCGAAGCTGTATGAAGAAGCGTGGAAGGATCCTCTGAATGATTCGGTTGTGTCTGAT GGCTACGAGGAGTACATCCGGCCAATGCTGAAGCAGCAGCTCCGCAATGCCAGGCTCTGA
AA sequence Show only first row Show all	>Lus10040183 pacid=23173946 polypeptide=Lus10040183 locus=Lus10040183.g ID=Lus10040183.BGIv1.0 annot-version=v1.0 METDGGVDHLADERNKAQFDVDEMKVVWAGSPHDYVRLDRAARGGACGDEIGLLVIIISYLILNPLIFSSFSSLLPTGDIVLSTLCSYLAFTCLRFGVYE FQAFRKDNRVMLSRKELFKNTLRKATYAWKRIIELRLSEEEATKLRLYVDEAAFTDLHWGMFVPAIKGQGTDEQQKKWLPLAYRMQIIGCYAQTELGHGS NVQGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLVTDGQEHGVHGYIVQLRSLDDHMPLPGITIGDIGMKFGNGAYNTMDNGVLRF DQVRIPRDQLLMRVLQVTREGKCVESNVPRQLIYGTMVYVRQKIVADASRALSRAVCIATRYSAVRRQFGSQNGVETQVIDYKTQQNRLFPLLASAYAFR FVGEWLKLLYTDVTQTLQASDFSTLPEVHACTAGLKSLTTSATADGIEECRKLCGGHGYLCSSGLPELFAVYVPACTYEGDNVVLLLQVARFLMKTVAQL PSGKKPLGTTSYLGRVEHLMQYRCGIEKAEHWIDPSVILEVFEARAARMCVNRAQKLDSFANPEEGFAELSAFLAEAAVAHCQLIVVSKFIEKLQQDIPG EGVKQQLKNLCNIYALNLINRHLGDFLSTGTITTKQASLANDQLRSLFSQVRPNAIALVDAFNYSDHYLGSVLGRYDGDVYPKLYEEAWKDPLNDSVVSD GYEEYIRPMLKQQLRNARL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10040183 [exp]	0	1
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	1.0	0.9575
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10009883 [exp]	2.0	0.9318
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	2.4	0.9336
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025093 [exp]	4.2	0.9345
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	4.5	0.9177
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10003395 [exp]	5.1	0.9150
AT5G18650			CHY-type/CTCHY-type/RING-type ...		Lus10033969 [exp]	5.7	0.9245
AT3G12100			Cation efflux family protein (...		Lus10021058 [exp]	8.1	0.8993
AT2G42130			Plastid-lipid associated prote...		Lus10012003 [exp]	9.2	0.9083
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	9.2	0.9110

Compare expression of checked genes

Lus10040183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.