Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47110 239 / 1e-72 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 236 / 1e-71 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 233 / 3e-70 Leucine-rich repeat protein kinase family protein (.1) AT5G39390 223 / 5e-70 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 230 / 2e-69 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 211 / 2e-62 EFR EF-TU receptor (.1) AT2G24130 147 / 3e-40 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 145 / 2e-39 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17750 136 / 3e-36 AtPEPR2 PEP1 receptor 2 (.1) AT4G20140 133 / 4e-35 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004388 [exp] 349 / 4e-111 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 315 / 1e-100 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10006445 [exp] 304 / 2e-99 AT3G47570 468 / 1e-152 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 312 / 2e-98 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 310 / 2e-98 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 301 / 2e-95 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 298 / 2e-94 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 298 / 4e-94 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10040186 [exp] 295 / 9e-94 AT3G47570 697 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G033700 [exp] 266 / 4e-82 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G100901 [exp] 251 / 2e-80 AT5G39390 394 / 9e-133 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 259 / 1e-79 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 258 / 3e-79 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 257 / 4e-79 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 256 / 7e-79 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G020000 [exp] 256 / 1e-78 AT3G47570 816 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 253 / 1e-77 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 251 / 5e-77 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G273001 [exp] 249 / 6e-77 AT3G47570 635 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040184 pacid=23173842 polypeptide=Lus10040184 locus=Lus10040184.g ID=Lus10040184.BGIv1.0 annot-version=v1.0 ATGTGTTCAAGCGTCGATTATCAAGGGAATGATTTCAAGGCCCTCATTTATGAGTTCTTTGCTAACGGAAGCTTGGAAGAATGGCTGCATCCGGTTCAAA CAATAGCCGACATCCCTACAAAATGCATCAAGTTCCTCCAAAGACTTGATGCCGCAATTGATATAGCTTCAGCAGTGGATTATCTTCACCATCAGAACGG TACACCCACAGTTCACTGTGATCTCAAGCCTAGCAACGTTCTTCTTGACAAGGATATGGTGGCTCATGTCAGTGATTTCGGATTAGCAAGAATCCTTCTG TCGCTATTTCCTAATCTCTCTACAGCTGGTCATACATCATCAAGCTCCGTAGGTATAAAGGGAACTGTTGGCTATGCACCTCCAGAATATGGCATGGGAA ACGGAATCTCGATACAAGGAGATGTCTACAGCTACGGAATTCTATTACTCGAGATGTTCACGGGAAAGAGGCCAACTGACGAATCTTTCAAAGAAGGTAT GAACCTTCATAGCTTTGTCAGAAGCGCTTTATCCGAGCATTTGGCAGCAGAACTTGTGGATCCAGTTCTACACAACGAGCTACTGCTTGGCGACGAGACA GCAACTCAATATTGCAGCTCATCAGAAGAGGCCAACAACAAGTGCAAGGGTCAAATACCAGAGGAGGTTCTGACTTGTGTTCTCAAGATTGGTGTTCTGT GTTCATCTGATTCCCCACAAGACAGAATTAGCATCACTGAAGTTGTAGCAAGGCTTGTCTCTCTGAGAAAGTTAGTTTGA
AA sequence Show only first row Show all	>Lus10040184 pacid=23173842 polypeptide=Lus10040184 locus=Lus10040184.g ID=Lus10040184.BGIv1.0 annot-version=v1.0 MCSSVDYQGNDFKALIYEFFANGSLEEWLHPVQTIADIPTKCIKFLQRLDAAIDIASAVDYLHHQNGTPTVHCDLKPSNVLLDKDMVAHVSDFGLARILL SLFPNLSTAGHTSSSSVGIKGTVGYAPPEYGMGNGISIQGDVYSYGILLLEMFTGKRPTDESFKEGMNLHSFVRSALSEHLAAELVDPVLHNELLLGDET ATQYCSSSEEANNKCKGQIPEEVLTCVLKIGVLCSSDSPQDRISITEVVARLVSLRKLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47110			Leucine-rich repeat protein ki...		Lus10040184 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	3.9	0.8980
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	4.2	0.8670
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10030054 [exp]	6.0	0.8023
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10002212 [exp]	12.8	0.8279
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031804 [exp]	13.5	0.8508
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10028047 [exp]	15.2	0.8043
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	16.1	0.8183
AT1G66920			Protein kinase superfamily pro...		Lus10025547 [exp]	18.3	0.8253
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029945 [exp]	20.8	0.8096
					Lus10025164 [exp]	21.8	0.8204

Compare expression of checked genes

Lus10040184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.