Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 442 / 4e-142 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 402 / 1e-126 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 397 / 8e-125 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 396 / 3e-124 EFR EF-TU receptor (.1) AT3G47110 363 / 8e-112 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 285 / 2e-82 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 277 / 9e-80 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 274 / 1e-78 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 267 / 4e-76 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT2G24130 260 / 3e-74 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030903 [exp] 710 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 681 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 680 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 670 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 669 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 665 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 663 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 657 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 651 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102800 [exp] 587 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 570 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 570 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 564 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 562 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 532 / 2e-176 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 532 / 3e-176 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 528 / 1e-174 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 524 / 5e-173 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 519 / 6e-171 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040185 pacid=23173934 polypeptide=Lus10040185 locus=Lus10040185.g ID=Lus10040185.BGIv1.0 annot-version=v1.0 ATGGCTTCAGGAATTAATAATCTGAGTGCATTTCGGGTCGTTATAGCAGTAGCAATTCTTCAGCTGTGCTTAATCTGTTGTACTTCCGGTAATAACAAGA CAGAGCGAGCGGCTTTGATGGAGATCAAGTCCATGATCTCTGACCCCTCGGGGGAACTGAGATCATGGAATGATTCCACCCGCATATGCAAATTCAATGG TGTGTATGTTAGCGGAACTGGAGCAAATGAAAGAGTCGTTGCCTTATACTTGCCATCTTTTCAGCTCTCGGGATCCATCTCGCCGCACATTGGCAATCTC AGCTTCATGACGCAGATCGTACTCCCGGACAACAACTTCAATGGAACAATCCCTGCTGAAATCGGCCATCTCAGCTTTTTGACGGACCTCGTACTCTCAG ACAACAGTTTCACTGGGGAAATCCCTGCTGAAATCGGCCGCCTTGGTAGATTGGAAAGGCTGGTGCTTTCGAACAACTCTTTCACCGGAGGATTGCCACT GCTAATGCCATCATTGAAAAAACTCGAATACTTCAGCGTATCAAGGAACAATCTGTCAGGAAGCATCCCTCCTTCTTACGGCAATTTTTCATCTCTCCAG AGGTTCATAGCTGGAAACAACAGCTTGAGCGGGACGGTACCTGAATCTCTAGGCCGACTCAGGAATCTTCTCACTCTCACTTTGGAAGGTAACAACTTAT CGGGTGAAATCCCTGCTTCCATTTTCAATCGTTCCTCTCTCGAAGAATTGTTCTTGGGAATGAACCAGTTCCACGGTAGTCTTCCGGTGGACCTAGCAAT AACACTTCCAAATATCCGGAGCTTAAATCTTAATACTAACCAGTTTACTGGCAGTGTTCCTTCTTCCTTATCCAATGCCTCCAATTTGGTTCAACTACAA CTTTCAGCCAACAAATTCTCCGGGAGCGTGCCTACTATGGCAAGCTCTCCCAAACTTTTCCGCTTTTCTATCAACCAAAATTTTCTCGGAACTGGGAAAG CTAATGATTTGAGGTTCTTCTCGTCTTTGACCAATGCCACAAGCTTGGAAATCCTGACCATGGACGACAACAACTTCGGAGGTAGCTTCCCGGAGGAAAT TGGTCGCTTGTCGACCAACTTGACGCGGCTAGATATGTCTAGCAACAAAATATCAGGAAGCATTCCGAGCGGGATACAAAACCTTGTCAACTTGCAGTTT TTCTCTGCAAGCCGGAACGATCTCTCAGGTAACATCCCATCATTCAAGGGGGAAATGCTTACGGATTTGGATTTGAGCAAAAACCGATTTTCAGGAAATG TTCCACTGTCTATTGGAAACTTGACTAGATTGAATAAACTGCGTCTGAATAGTAACCGTCTACGAGGAGAAATTCCTACTTCTATTGAGAATTGCAAAAG TTTAATACTTTTGGATCTTTCTCACAACAATTTCAATGGTTCAATTCCTCCACAAGTCATGGGTCTTTCATCCTTGTCAATCCTCCTTAACTTGTCTCAC AATCAACTCACTGGAGCCCTTCCAGTGGAAATGGGGAAGTTAACGAACTTGGGCGTGTTGGATGTGTCCCAAAACATGTTGTCGGGCAGCATTCCGAGCA GTATTGGTAGTTGTGTCCTCCTGGAGGCGGTTTACTTGCAAGACAATTTACTGCAAGGTGATATTCCTTCTGTTTTGGGTTCATTGAGAGGGATTCAACA ATTAGACATTTCTTCCAATAACTTATCAGGTCAAATTCCGAAATCCTTTGAAGGCATGAACATCTTGCAACTTTTGAATTTGTCATATAATAATTTTGAG GGTGAAATGCCGAAAGGAGGAGTCTTGAGAAACTGCAGCATCGTTTTGATCACCGGAAATAGCCAGCTTTGTGGGGGGATGGCAGACCTTAAACTTCCGT CTTGTAACTCGAGACATGGAAACAAGACATTCACCCATAAGTGGAAGATTGTCGTATCAACGATCTCCGGTCTAATTTTGTTGGCTTCCATAGGTTGTTG CTTGCTTATCTTCTGGATAAGTAAGAGGAAGATTAGTAAGAGGGAGAAAAAAGATGGAGTCGAAAAAAATGATTGGCAAATAAAACAACTCTCTTACCAA AGCATTTACAAAGCTACAGATGGTTTCTCGACAGCCAATTTAATTGGTATGGGCAGTTTTGGTTCCGTGTTCAAGGGAGTTCTTGACACCACTGGAACCA GTATCGCTGTTAAGGTATTCAACCTCCAACGCCGCGGATCTTCTAAGAGTTTTATTGCTTAA
AA sequence Show only first row Show all	>Lus10040185 pacid=23173934 polypeptide=Lus10040185 locus=Lus10040185.g ID=Lus10040185.BGIv1.0 annot-version=v1.0 MASGINNLSAFRVVIAVAILQLCLICCTSGNNKTERAALMEIKSMISDPSGELRSWNDSTRICKFNGVYVSGTGANERVVALYLPSFQLSGSISPHIGNL SFMTQIVLPDNNFNGTIPAEIGHLSFLTDLVLSDNSFTGEIPAEIGRLGRLERLVLSNNSFTGGLPLLMPSLKKLEYFSVSRNNLSGSIPPSYGNFSSLQ RFIAGNNSLSGTVPESLGRLRNLLTLTLEGNNLSGEIPASIFNRSSLEELFLGMNQFHGSLPVDLAITLPNIRSLNLNTNQFTGSVPSSLSNASNLVQLQ LSANKFSGSVPTMASSPKLFRFSINQNFLGTGKANDLRFFSSLTNATSLEILTMDDNNFGGSFPEEIGRLSTNLTRLDMSSNKISGSIPSGIQNLVNLQF FSASRNDLSGNIPSFKGEMLTDLDLSKNRFSGNVPLSIGNLTRLNKLRLNSNRLRGEIPTSIENCKSLILLDLSHNNFNGSIPPQVMGLSSLSILLNLSH NQLTGALPVEMGKLTNLGVLDVSQNMLSGSIPSSIGSCVLLEAVYLQDNLLQGDIPSVLGSLRGIQQLDISSNNLSGQIPKSFEGMNILQLLNLSYNNFE GEMPKGGVLRNCSIVLITGNSQLCGGMADLKLPSCNSRHGNKTFTHKWKIVVSTISGLILLASIGCCLLIFWISKRKISKREKKDGVEKNDWQIKQLSYQ SIYKATDGFSTANLIGMGSFGSVFKGVLDTTGTSIAVKVFNLQRRGSSKSFIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10040185 [exp]	0	1
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10006848 [exp]	1.0	0.9289
AT3G47110			Leucine-rich repeat protein ki...		Lus10040184 [exp]	3.9	0.8980
AT3G16360		AHP4	HPT phosphotransmitter 4 (.1.2...		Lus10025821 [exp]	4.2	0.9238
					Lus10025164 [exp]	6.5	0.9049
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	7.5	0.9108
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10033231 [exp]	10.1	0.8916
					Lus10016111 [exp]	12.0	0.9015
AT5G57710			Double Clp-N motif-containing ...		Lus10020886 [exp]	13.6	0.8700
AT1G23850			unknown protein		Lus10030860 [exp]	13.8	0.9025
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10017910 [exp]	16.2	0.9024

Compare expression of checked genes

Lus10040185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.