Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 627 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 564 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 563 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 559 / 0 EFR EF-TU receptor (.1) AT3G47110 555 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 368 / 4e-112 Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 354 / 5e-105 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 352 / 7e-105 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G08850 334 / 6e-99 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) AT4G20140 334 / 6e-98 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004388 [exp] 1488 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 896 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 888 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 880 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 877 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 877 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 874 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 861 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 857 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 798 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 796 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 772 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 769 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 767 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 729 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 723 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 712 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 705 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 704 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040186 pacid=23174221 polypeptide=Lus10040186 locus=Lus10040186.g ID=Lus10040186.BGIv1.0 annot-version=v1.0 ATGGCTTTCCACTTGTGCTTCAGTTGCTTCAATGCTGTTGATGCTGCATCAAGCAACGAGACGGATCGCCAAGCCTTGCTTCATTTCAAGTCGATGATTT CTAGCGATCCAGTCGGAGTATTGAGCTCATGGAACAGTTCCTCCTCCTCTACCAACTTCTGCAAGTGGCAGGGTGTTACTTGTAGCACAAGGCACAAAAG AATCGCAGTCCTAGACTTGAGATCCCTGCAACTCTCAGGTTCCGTTTCTCCGCATCTCGGAAACCTCAGCTTCCTAAAGGAACTCTACTTAGTCAACAAC AGCCTGACGCAACAGATTCCTCCTGTAATCGGCCGCCTCCACAAACTGGAGAGGCTGCTCATCCTGAACAACTCCTTGAGTGGCGAAATCCCACCGACAT TGTCAAACTGTTCCAATCTTGTCGTGTTCAACGCCGCCAACAACCTTCTGCTCGGTGAAATACCACGGGAGATCGGTTCCTTGAAGAATCTCCGGAACTT CGTTGTCAACTTCAACAGATTAACAGGATCCATCCCTGCTTCTCTAGGGAATCTTTCATCTCTCATGGTCCTCTCTACAAGCAACAACCAACTATCCGGT GATATTCCGAGCTCACTAGGTCAATTGAAGAACCTCAGCATTTTGTACCTTCCAATGAACAGTTTATCCGGCACCATCCCTTCATTAATCTTCAATCTTT CTTCTCTTACATATCTCTACTTCGGATTCAACCAGCTCCGCGGAACCCTCCCTTCCGATTTGGGAATCTCGCTCCCGAATCTCCAGAGCTTCAACGTGGC TCTCAACTACCTGACTGGTAACATCCCCGCTTCATTCTCAAATTCCTCGAGTTTGGAGCAACTTCAGCTCCAAGGAAACGGCTTCACCGGAAGAGTACCG GGTTTGGGGAGCGCTCGTAACCTTCTACGATTGATCATCAACAACAACTCCCTCGGTACCGGTGGAGGCAACAACCATGATCTCAGATTCATTTCTTCTT TGACCAATGCCACTAGTTTACAAGCATTGATCATTGACCAGAACAACTTCGGAGGCAACTTGCCTTCACACGCAAGCAACCTATCCGCCTTGCAGATTCT CTACATAAGTAATATCCCATCCACCATTGCGAATCTAAAGAATCTAGAGGAGTTTGATTTGAGTAACAATAGTTTCACTGGGAATCTGCCATCATCAATT GGAAACCTGACCAGATTACTAGAGCTGAAACTGGCAAGGAACAATTTCCAAGGAAGAATTCCTTCAAGCATTTCGGATTGTGAAAAGCTGATAACTTTGG ATCTTTCTCATAACAATTTCAGTGGTGCAATTCCTGAAGGAGTTCTGAATCTTGTTTCCTTGTCAGTTTTCCTGAATTTGTCTAACAACCTTTTGAGTGG TTCGTTTCCGATCGAAGTTGGAAACCTGAAGAATTTGGGCGCGTTGGATCTATGTCGTAATATGTTGTCAGGAAGCATTCCGAGAAGTCTTGGTAGTTGT GTCAGGTTGGAATCATTGAACTTGCAGGGAAATCTTTTCCAGGGAGATATTCCGTCTTCTTTGAGTTCGTTGAGAGGTATTCAAGAGCTGGACGTCTCGG GGAATAATTTATCAGGTCAAATTCAGAAACTTTTTGAAGGCATGAACATGTTGAAAGTTTTGAATTTGTCTTACAACGATTTCGAGGGTGAGTTTCCGAG AGGAGTCTTTATGAACCAGAGCATCAATTCGGTCGTTGGGAATGGAAAACTATGTGGTGGCATAGCTGATCTCAATCTTCCACCTTGTAAGTTTAGTGAC CGAAAGAAGACATTAAGTCATAAATGGAAGATCGTAATATCGACAATCTCGAGTCTGGTTTTCTTGGCCTTCTTGATAGCTTCTTGCCTGCTCATCTTCT GGATTAAAAAGAGAGTTAGAAAAGAGCATGCAGTTTCAGCCGGTGGCGATTCGATGTCGTACCAAAGGCTCTGCAAGGCCACAGACGGTTTCTCCTCATC GAATTTGGTTGGCGTGGGCGGTTTTGGTTCTGTGTACAAGGGAATCCTTGACGAGAATGAAATTATTACCACTTTTGCTGTTAAGGTATTCAACCTTTAT CGTCGGGGAGCTTCCAAGAGTTTTATAGCAGAATGTAAAGCATTGAAGAACATTAGACACAGAAATCTTGTGAGGATAGTGACGGTGTGTTCGAGTGTTG ACTATCAGGGGAACGATTTCAAGGCTCTGATATATAAGTTCTTGGCTAACGGAAGTTTGGAAGAGTGGCTGCATCCCATACTGGAAAGTGTTGATGGCCG GAATCCTACTCCTAAGATGTTGAGCTTCCTCCAAAGGCTGAATGCTGCAATTGATATAGCTTCTGCAGTGGATTATCTTCGCCATCAATGTGGGACGCCC ATTGTTCACTGTGATCTCAAGCCTAGCAACGTTCTCCTCGACGAGGATAAGGTGGCTCATGCCAAATATGGCATAGGGAATGAAGTGTTGATACAAGGAC ATGTGTACAGTTACGGAATTCTCCTGTTCAAGATGTTCACGGGAAAGAGGCCAACCGACGAATCTTTCAGAGAAGGTTCGAACCTTCATAACTTTGTCAG AAGCTCTTTATCCGAACATATGACGACACAAGTTGTGGATCCAGTTCTACACAATGAGCTACTTCTTGGTCAGTCAACCCCTCGCAGTAGTAGCAACAAA AACAAAGGACAAATACCAGAGGGGGTTCTGATTTCCATCCTCAAAATTGGTGTTATTTGTTCTTCGGATTTCTCACAGGACAGGATTAGCATGACTGATG TTGTATCCAGACTTGTCTCTCTATGA
AA sequence Show only first row Show all	>Lus10040186 pacid=23174221 polypeptide=Lus10040186 locus=Lus10040186.g ID=Lus10040186.BGIv1.0 annot-version=v1.0 MAFHLCFSCFNAVDAASSNETDRQALLHFKSMISSDPVGVLSSWNSSSSSTNFCKWQGVTCSTRHKRIAVLDLRSLQLSGSVSPHLGNLSFLKELYLVNN SLTQQIPPVIGRLHKLERLLILNNSLSGEIPPTLSNCSNLVVFNAANNLLLGEIPREIGSLKNLRNFVVNFNRLTGSIPASLGNLSSLMVLSTSNNQLSG DIPSSLGQLKNLSILYLPMNSLSGTIPSLIFNLSSLTYLYFGFNQLRGTLPSDLGISLPNLQSFNVALNYLTGNIPASFSNSSSLEQLQLQGNGFTGRVP GLGSARNLLRLIINNNSLGTGGGNNHDLRFISSLTNATSLQALIIDQNNFGGNLPSHASNLSALQILYISNIPSTIANLKNLEEFDLSNNSFTGNLPSSI GNLTRLLELKLARNNFQGRIPSSISDCEKLITLDLSHNNFSGAIPEGVLNLVSLSVFLNLSNNLLSGSFPIEVGNLKNLGALDLCRNMLSGSIPRSLGSC VRLESLNLQGNLFQGDIPSSLSSLRGIQELDVSGNNLSGQIQKLFEGMNMLKVLNLSYNDFEGEFPRGVFMNQSINSVVGNGKLCGGIADLNLPPCKFSD RKKTLSHKWKIVISTISSLVFLAFLIASCLLIFWIKKRVRKEHAVSAGGDSMSYQRLCKATDGFSSSNLVGVGGFGSVYKGILDENEIITTFAVKVFNLY RRGASKSFIAECKALKNIRHRNLVRIVTVCSSVDYQGNDFKALIYKFLANGSLEEWLHPILESVDGRNPTPKMLSFLQRLNAAIDIASAVDYLRHQCGTP IVHCDLKPSNVLLDEDKVAHAKYGIGNEVLIQGHVYSYGILLFKMFTGKRPTDESFREGSNLHNFVRSSLSEHMTTQVVDPVLHNELLLGQSTPRSSSNK NKGQIPEGVLISILKIGVICSSDFSQDRISMTDVVSRLVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10040186 [exp]	0	1
AT5G25840			Protein of unknown function (D...		Lus10011427 [exp]	4.5	0.8908
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	4.6	0.9082
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	5.5	0.8979
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015993 [exp]	6.0	0.8759
AT2G41040			S-adenosyl-L-methionine-depend...		Lus10008815 [exp]	8.5	0.8955
AT3G18430			Calcium-binding EF-hand family...		Lus10042708 [exp]	10.6	0.8930
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Lus10027431 [exp]	12.0	0.8133
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10039378 [exp]	12.5	0.8653
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026906 [exp]	13.8	0.8355
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042875 [exp]	16.2	0.8464

Compare expression of checked genes

Lus10040186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.